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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : carB
DDBJ      :carB         carbamoylphosphate synthase large subunit
Swiss-Prot:CARB_AGRT5   RecName: Full=Carbamoyl-phosphate synthase large chain;         EC=6.3.5.5;AltName: Full=Carbamoyl-phosphate synthetase ammonia chain;

Homologs  Archaea  55/68 : Bacteria  819/915 : Eukaryota  189/199 : Viruses  0/175   --->[See Alignment]
a.92.1c.24.1c.30.1c.98.2d.142.1d.201.1
:1162 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->1134 1bxrA PDBj 0.0 64.7 %
:RPS:PDB   1->1134 1bxrA PDBj 0.0 63.5 %
:RPS:SCOP  1->127 1a9xA3  c.30.1.1 * 5e-23 79.5 %
:RPS:SCOP  116->160 1kvnA  d.201.1.1 * 2e-06 15.6 %
:RPS:SCOP  208->455 1a9xA5  d.142.1.2 * 1e-67 83.1 %
:RPS:SCOP  456->603 1a9xA1  a.92.1.1 * 7e-40 42.8 %
:RPS:SCOP  669->742 2iojA1  c.98.2.2 * 3e-19 15.1 %
:RPS:SCOP  741->1025 1a9xA6  d.142.1.2 * 2e-53 55.3 %
:RPS:SCOP  1025->1161 1b93A  c.24.1.2 * 1e-29 16.8 %
:HMM:SCOP  4->130 1a9xA4 c.30.1.1 * 1.4e-51 60.3 %
:HMM:SCOP  181->455 1a9xA5 d.142.1.2 * 2.5e-101 49.5 %
:HMM:SCOP  449->610 1a9xA1 a.92.1.1 * 3.4e-52 48.0 %
:HMM:SCOP  616->740 1a9xA4 c.30.1.1 * 6.3e-50 57.0 %
:HMM:SCOP  738->1025 1a9xA5 d.142.1.2 * 4.6e-94 52.7 %
:HMM:SCOP  1026->1163 1a9xA2 c.24.1.1 * 2.2e-40 46.3 %
:RPS:PFM   6->123 PF00289 * CPSase_L_chain 4e-18 43.2 %
:RPS:PFM   201->386 PF02786 * CPSase_L_D2 2e-28 39.2 %
:RPS:PFM   487->602 PF02787 * CPSase_L_D3 1e-30 49.1 %
:RPS:PFM   618->733 PF00289 * CPSase_L_chain 3e-21 56.1 %
:RPS:PFM   738->960 PF02786 * CPSase_L_D2 8e-29 37.9 %
:RPS:PFM   1054->1129 PF02142 * MGS 4e-08 40.8 %
:HMM:PFM   203->387 PF02786 * CPSase_L_D2 1.1e-66 41.2 182/211  
:HMM:PFM   738->802 PF02786 * CPSase_L_D2 6.7e-10 26.2 65/211  
:HMM:PFM   828->961 PF02786 * CPSase_L_D2 5e-21 25.8 132/211  
:HMM:PFM   6->123 PF00289 * CPSase_L_chain 2.1e-23 33.3 102/110  
:HMM:PFM   619->733 PF00289 * CPSase_L_chain 3e-23 34.0 97/110  
:HMM:PFM   482->602 PF02787 * CPSase_L_D3 8.4e-44 47.9 119/121  
:HMM:PFM   1047->1132 PF02142 * MGS 6.6e-24 40.7 86/95  
:BLT:SWISS 1->1162 CARB_AGRT5 0.0 100.0 %
:PROS 774->788|PS00866|CPSASE_1
:PROS 350->357|PS00867|CPSASE_2
:PROS 924->931|PS00867|CPSASE_2
:REPEAT 2|6->454|618->1024
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87923.2 GT:GENE carB GT:PRODUCT carbamoylphosphate synthase large subunit GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2150672..2154160 GB:FROM 2150672 GB:TO 2154160 GB:DIRECTION + GB:GENE carB GB:PRODUCT carbamoylphosphate synthase large subunit GB:PROTEIN_ID AAK87923.2 GB:DB_XREF GI:159140362 GB:GENE:GENE carB LENGTH 1162 SQ:AASEQ MPKRQDIKSILIIGAGPIVIGQACEFDYSGTQACKALKEEGYRVILVNSNPATIMTDPGLADATYVEPITPEVVAKIIAKERPDALLPTMGGQTALNTALSLKRMGVLDRYNVEMIGAKPEAIDMAEDRALFREAMARIGLETPKSMLANATEIKDADRKTHEAARTELKAKLSGAELDKALDNLENQWNLGETDRKQRYISHAMAIAAQAIDVVGLPAIIRPSFTMGGTGGGIAYNRSEFFEIIGGGLDASPTTEVLIEESVLGWKEYEMEVVRDKADNCIIICSIENIDPMGVHTGDSITVAPALTLTDKEYQMMRNASIAVLREIGVETGGSNVQFAVNPKDGRLVVIEMNPRVSRSSALASKATGFPIAKVAAKLAIGYTLDELENDITGGATPASFEPSIDYVVTKIPRFAFEKFPGASPILTTAMKSVGEVMAIGRTFAESLQKALRGMETGLTGLDEIEIPGYEEGEGSKNAIRAAIGTPTPDRLRMVAQAMRMGMSEEEVHENSKIDPWFIAQLKAIVDMEARIREHGLPQDAENLRMLKAMGFSDARLASLTSKRPKEVAELRNSLNVRPVFKRIDTCAAEFASPTAYMYSTYETPFVGAARSEAQVSDRKKVVILGGGPNRIGQGIEFDYCCCHAAFALKDAGFEAIMINCNPETVSTDYDTSDRLYFEPLTAEDVIEIMRAEQEKGELVGVIVQFGGQTPLKLAEALEKNGIPILGTAPDMIDLAEDRDRFQKLLMKLDLAQPNNGIAYSVEQARLVASEIGFPLVVRPSYVLGGRAMQIIHSEGQLQTYLLDTVPGLVPEDIKQRYPNDKTGQINTLLGKNPLLFDSYLTNAVEVDVDALCDGENVFVSGIMEHIEEAGIHSGDSACSLPSRSLSKETLDELERQTTALAKALKVGGLMNVQYAIKDGTIYVLEVNPRASRTVPFVAKTIGAPIAKIAARVMAGEKLDAAIAAYGEKPDPRNLKHIAVKEAVFPFARFPGVDILLGPEMRSTGEVIGLDTDFALAFAKSQLGAGVDLPRSGTVFVSVRDEDKEGVLSAIRILVESGFKVLATGGTQRFLAEQGINAEKINKVQEGRPHIEDAIRNRQVQLVINTTDSNKAISDSKSLRRATLMQKVPYYTTMAGAEAAALAIKALKAGNLEVKPLQSYFN GT:EXON 1|1-1162:0| SW:ID CARB_AGRT5 SW:DE RecName: Full=Carbamoyl-phosphate synthase large chain; EC=6.3.5.5;AltName: Full=Carbamoyl-phosphate synthetase ammonia chain; SW:GN Name=carB; OrderedLocusNames=Atu2178; ORFNames=AGR_C_3955; SW:KW Amino-acid biosynthesis; Arginine biosynthesis; ATP-binding;Complete proteome; Ligase; Magnesium; Manganese; Metal-binding;Nucleotide-binding; Pyrimidine biosynthesis; Repeat. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->1162|CARB_AGRT5|0.0|100.0|1162/1162| GO:SWS:NREP 7 GO:SWS GO:0008652|"GO:cellular amino acid biosynthetic process"|Amino-acid biosynthesis| GO:SWS GO:0006526|"GO:arginine biosynthetic process"|Arginine biosynthesis| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006221|"GO:pyrimidine nucleotide biosynthetic process"|Pyrimidine biosynthesis| PROS 774->788|PS00866|CPSASE_1|PDOC00676| PROS 350->357|PS00867|CPSASE_2|PDOC00676| PROS 924->931|PS00867|CPSASE_2|PDOC00676| NREPEAT 1 REPEAT 2|6->454|618->1024| SEG 464->475|eieipgyeegeg| SEG 1135->1150|agaeaaalaikalkag| BL:PDB:NREP 1 BL:PDB:REP 1->1134|1bxrA|0.0|64.7|1042/1073| RP:PDB:NREP 1 RP:PDB:REP 1->1134|1bxrA|0.0|63.5|1043/1073| RP:PFM:NREP 6 RP:PFM:REP 6->123|PF00289|4e-18|43.2|102/102|CPSase_L_chain| RP:PFM:REP 201->386|PF02786|2e-28|39.2|182/207|CPSase_L_D2| RP:PFM:REP 487->602|PF02787|1e-30|49.1|116/123|CPSase_L_D3| RP:PFM:REP 618->733|PF00289|3e-21|56.1|98/102|CPSase_L_chain| RP:PFM:REP 738->960|PF02786|8e-29|37.9|203/207|CPSase_L_D2| RP:PFM:REP 1054->1129|PF02142|4e-08|40.8|76/95|MGS| HM:PFM:NREP 7 HM:PFM:REP 203->387|PF02786|1.1e-66|41.2|182/211|CPSase_L_D2| HM:PFM:REP 738->802|PF02786|6.7e-10|26.2|65/211|CPSase_L_D2| HM:PFM:REP 828->961|PF02786|5e-21|25.8|132/211|CPSase_L_D2| HM:PFM:REP 6->123|PF00289|2.1e-23|33.3|102/110|CPSase_L_chain| HM:PFM:REP 619->733|PF00289|3e-23|34.0|97/110|CPSase_L_chain| HM:PFM:REP 482->602|PF02787|8.4e-44|47.9|119/121|CPSase_L_D3| HM:PFM:REP 1047->1132|PF02142|6.6e-24|40.7|86/95|MGS| GO:PFM:NREP 12 GO:PFM GO:0003824|"GO:catalytic activity"|PF00289|IPR005481| GO:PFM GO:0008152|"GO:metabolic process"|PF00289|IPR005481| GO:PFM GO:0003824|"GO:catalytic activity"|PF02786|IPR005479| GO:PFM GO:0005524|"GO:ATP binding"|PF02786|IPR005479| GO:PFM GO:0008152|"GO:metabolic process"|PF02786|IPR005479| GO:PFM GO:0004086|"GO:carbamoyl-phosphate synthase activity"|PF02787|IPR005480| GO:PFM GO:0006807|"GO:nitrogen compound metabolic process"|PF02787|IPR005480| GO:PFM GO:0003824|"GO:catalytic activity"|PF00289|IPR005481| GO:PFM GO:0008152|"GO:metabolic process"|PF00289|IPR005481| GO:PFM GO:0003824|"GO:catalytic activity"|PF02786|IPR005479| GO:PFM GO:0005524|"GO:ATP binding"|PF02786|IPR005479| GO:PFM GO:0008152|"GO:metabolic process"|PF02786|IPR005479| RP:SCP:NREP 7 RP:SCP:REP 1->127|1a9xA3|5e-23|79.5|127/127|c.30.1.1| RP:SCP:REP 116->160|1kvnA|2e-06|15.6|40/104|d.201.1.1| RP:SCP:REP 208->455|1a9xA5|1e-67|83.1|248/275|d.142.1.2| RP:SCP:REP 456->603|1a9xA1|7e-40|42.8|145/153|a.92.1.1| RP:SCP:REP 669->742|2iojA1|3e-19|15.1|73/120|c.98.2.2| RP:SCP:REP 741->1025|1a9xA6|2e-53|55.3|244/244|d.142.1.2| RP:SCP:REP 1025->1161|1b93A|1e-29|16.8|137/148|c.24.1.2| HM:SCP:REP 4->130|1a9xA4|1.4e-51|60.3|121/0|c.30.1.1|1/2|PreATP-grasp domain| HM:SCP:REP 181->455|1a9xA5|2.5e-101|49.5|275/0|d.142.1.2|2/3|Glutathione synthetase ATP-binding domain-like| HM:SCP:REP 449->610|1a9xA1|3.4e-52|48.0|152/153|a.92.1.1|1/1|Carbamoyl phosphate synthetase, large subunit connection domain| HM:SCP:REP 616->740|1a9xA4|6.3e-50|57.0|121/0|c.30.1.1|2/2|PreATP-grasp domain| HM:SCP:REP 738->1025|1a9xA5|4.6e-94|52.7|264/0|d.142.1.2|3/3|Glutathione synthetase ATP-binding domain-like| HM:SCP:REP 1026->1163|1a9xA2|2.2e-40|46.3|136/0|c.24.1.1|1/1|Methylglyoxal synthase-like| OP:NHOMO 1523 OP:NHOMOORG 1063 OP:PATTERN ---1-11111111111-1111111111111112222231121211111111122-1-----111--21 1111111111111111111-11111111111111111211121111111222111111111111111111111111111-1113323322221211-1111111111111---------------22222223222111111111111111111111121112111111112122211121111111111112311111111111111132222311122212221111112111111111111111111111121111232323222111132211112221111111111111111111111111111111111111111122-11---111-1-1222212222-2--2112133133111111112-11111111112112211221223112222222222211-22222132222222211121112121211232222222211111111111111121111111111---------------1111112112112211111111111111111111111211111111112111111111111111111112111111111111312111111111111111211112212112222111111111111111111111111111111211111111111111111111211111-211111111111111111111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111312---1-11----1--111111111111122211112122212111111111111111111111111111222121122211111121111111--------------------------------------1--11111122 12--112-311-11222332222222222223222222223222223322222232232222222222222232222-3222222222-2322224222222-443-22173322342222222432316K2-3221222212211221222122222224-12211211A21512111K1111121442122263222 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 1162 STR:RPRED 100.0 SQ:SECSTR ccccccccEEEEEccccccTTccTHHHHHHHHHHHHHHTTccEEEEEcccTTccTTcTTTccEEEcccccHHHHHHHHHHHcccEEEccccHHHHHHHHHHHHHTTHHHHHTcEEccccHHHHHHHHcHHHHHHHHHHTTcccccEEEEcccccccGGGHHHHHHHHcccccHcHHHHHHHHHHHccHHHHTcHHHHcEEEEccHHHHHHHHHHHcccEEEEETTccTTTTcEEEccHHHHHHHHHHHHHHcccccEEEEcccTTcEEEEEEEEEcTTccEEEEEEEEEcccTTccTTcccEEEccccccHHHHHHHHHHHHHHHHHHTcccEEEEEEEEEETTTTEEEEEEEEccccHHHHHHHHHHTccHHHHHHHHHTTccTTTcccGGGTTccccccccccccEEEEEEEccGGGcTTccccccccccccEEEEEEEccHHHHHHHHHHHccccccccccccccccTTcTTHHHHHHHHHHcccTTHHHHHHHHHHHTccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHTTccHHHHHHHTTccHHHHHHHHHHHTcccEEEEccccTTcccccccEEEEEcccccccccccccccccccEEEEEccccccTTccHHHHHHHHHHHHHHHHTTcEEEEEEccTTccTTcTTTccEEEEccccHHHHHHHHHHHcHHHcccEEEccccTHHHHHHHHHHHHTTccEEcccHHHHHHHHcHHHHHHHHHHTTcccccEEEEccHHHHHHHHHHHcccEEEEcccccTTTTcEEEccHHHHHHHHHHHHHHcTTHHHHccccHHHEccccHTTHHccEEEEEccTTcEEEEEEEEEccccEEEEEEEEEcccTTccGGGccEEEccccccHHHHHHHHHHHHHHHHHHTccEEEEEEEEEETTEEEEEEEEccccTTHHHHHHHHTccHHHHHHHHHTTccHHHHHTTHHTcccccccccEEEEEEEccGGGcTTccccccccccccEEEEEEEccHHHHHHHHHHHTTcccccccEEEEEccGGGGTHHHHHHHHHHHTTcEEEEcHHHHHHHHHHTcccEEcccTTTccccHHHHHHTTcccEEEEccccHHHHHHTHHHHHHHHHTTcEEEccHHHHHHHHHHHHHTccTTTccccHHHHHH DISOP:02AL 1-3,1162-1163| PSIPRED ccccccccEEEEEcccccEEccHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHcccHHHcHHHEEccccHHHHHHHHHHHcccEEEEcccccHHHHHHHHHHHcccHHHcccEEccccHHHHHHHccHHHHHHHHHHccccccccccccccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHccccEEEEEcccccccccEEEccHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEEEEccccEEEEccHHHccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHccccEEEEEEEEEEEccccEEEEEEEcccccccHHHHHHHHcccHHHHHHHHHcccccccccccccccccccccccccccEEEcccccccccccccccccccccccEEEEEEEEccHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHccccccHHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHcccEEEEEEEcccccccccccccEEEEEccccccccccccccccccEEEEEccccccccccccHHHHHHHHHHHHHHcccEEEEEcccHHHcccHHHHHHHHHcccccHHHHHHHHHHHcccccccEEEEccccccHHHHHHHHHHcccEEEcccHHHHHHHHcHHHHHHHHHHcccccccccccccHHHHHHHHHHccccEEEEEccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccccEEEEEEEEEEcccEEEEcccccccccccccccEEEEEEcccccHHHHHHHHHHHHHHHHHcccccccEEEEEEEccEEEEEEEccccccHHHHHHHHHcccHHHHHHHHHccccccccccccccccccccccEEEccccccccccccccccccccEEEccEEEEEEEccHHHHHHHHHHHcccccccccEEEEEEccccHHHHHHHHHHHHHcccEEEEEHHHHHHHHHccccEEEEEccccccHHHHHHHHcccEEEEEEcccccccccccHHHHHHHHHccccEEEcHHHHHHHHHHHHHHcccccEEEEHHHHcc //