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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : cbiD
DDBJ      :cbiD         cobalamin biosynthetic protein
Swiss-Prot:CBID_AGRT5   RecName: Full=Putative cobalt-precorrin-6A synthase [deacetylating];         EC=2.1.1.-;

Homologs  Archaea  29/68 : Bacteria  221/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
e.54.1
:378 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   61->159 1sr8A PDBj 5e-04 42.9 %
:RPS:SCOP  64->270 1sr8A  e.54.1.1 * 1e-27 24.6 %
:HMM:SCOP  1->286 1sr8A_ e.54.1.1 * 2e-84 54.4 %
:RPS:PFM   35->267 PF01888 * CbiD 5e-47 45.5 %
:HMM:PFM   8->267 PF01888 * CbiD 3.4e-78 44.2 260/261  
:HMM:PFM   237->300 PF06230 * DUF1009 5e-05 39.7 58/214  
:BLT:SWISS 3->378 CBID_AGRT5 e-162 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88508.2 GT:GENE cbiD GT:PRODUCT cobalamin biosynthetic protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2797189..2798325 GB:FROM 2797189 GB:TO 2798325 GB:DIRECTION + GB:GENE cbiD GB:PRODUCT cobalamin biosynthetic protein GB:PROTEIN_ID AAK88508.2 GB:DB_XREF GI:159140635 GB:GENE:GENE cbiD LENGTH 378 SQ:AASEQ MHMETDGKTLRRGWTTGTCAAAATKAACAALLTGEFPYPVDVELPSGARPAFSLATEEKGENFARAGVVKDAGDDPDVTHGALIESTVRRGEPGSGITFRAGKGVGIITRPGLPLPPGEPAINPVPRRMIETAIREVAGENADFEVEISVRDGEKLAEKTLNGRLGILGGISILGTTGVVIPFSCSAWIHSIWRGIDVARATGCTHVLGATGNTSEKAGQAVYDLPETALIDMGDFIGGMLKYLRSHPVERVTIAGGVAKMTKLAQGMLDVHSKKGLADLEALAVLAAEAGGDDNLAVAIRQANMVAHAFQLAESVGIDLGAVVAEKAWVTAAAALKTPAIALDILVFDRQGALKGRTTSTPSHQPAPSSFGDRNRRT GT:EXON 1|1-378:0| SW:ID CBID_AGRT5 SW:DE RecName: Full=Putative cobalt-precorrin-6A synthase [deacetylating]; EC=2.1.1.-; SW:GN Name=cbiD; OrderedLocusNames=Atu2795; ORFNames=AGR_C_5073; SW:KW Cobalamin biosynthesis; Complete proteome; Transferase. SW:EXACT F SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 3->378|CBID_AGRT5|e-162|100.0|376/376| GO:SWS:NREP 2 GO:SWS GO:0009236|"GO:cobalamin biosynthetic process"|Cobalamin biosynthesis| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| SEG 15->34|ttgtcaaaatkaacaalltg| SEG 160->178|tlngrlgilggisilgttg| SEG 276->294|gladlealavlaaeaggdd| SEG 322->343|avvaekawvtaaaalktpaial| BL:PDB:NREP 1 BL:PDB:REP 61->159|1sr8A|5e-04|42.9|84/282| RP:PFM:NREP 1 RP:PFM:REP 35->267|PF01888|5e-47|45.5|233/260|CbiD| HM:PFM:NREP 2 HM:PFM:REP 8->267|PF01888|3.4e-78|44.2|260/261|CbiD| HM:PFM:REP 237->300|PF06230|5e-05|39.7|58/214|DUF1009| GO:PFM:NREP 2 GO:PFM GO:0009236|"GO:cobalamin biosynthetic process"|PF01888|IPR002748| GO:PFM GO:0016740|"GO:transferase activity"|PF01888|IPR002748| RP:SCP:NREP 1 RP:SCP:REP 64->270|1sr8A|1e-27|24.6|179/282|e.54.1.1| HM:SCP:REP 1->286|1sr8A_|2e-84|54.4|252/282|e.54.1.1|1/1|CbiD-like| OP:NHOMO 251 OP:NHOMOORG 250 OP:PATTERN ------1111111111--1-------------11111111111--------11--------111--11 ---1---------------------------------------1----------------11----1--1-----------11-----11-1-111---------1-------------------11-------1111111------------------------------------------11-11----1-------------------------1111---1111111----------------------------------11---------------------------------------------1----------111111111111111111111111----111111111--1111----11------------1--11--------111111111-1-1-1--1-------111--------11---1---------11111111----11-1----------------------------------------111111-11111111111111111--------1-21---11-1---1----1------------11-11-1-111-1111-111111111-----1-1-----------------------------1-------------------------1------1-------1---1--------------------------------111--11-11-1111111111111----------1------------------------1-1-1---------------------------1111111--1111-111---------------------1------------------1---1111--------1------------------------------11-------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 84 STR:RPRED 22.2 SQ:SECSTR ############################################################TTEEE##EEcccTTcccTTTTcEEEEEEEcc###cEEEE##cTEEcE########ETTEEcccHHHHHHHHHHHHHHHHTTcccEEEEEcTTHHHHHHT########################################################################################################################################################################################################################### DISOP:02AL 1-5,363-379| PSIPRED cccccccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccEEEEEEEEEEEcccEEEEEEEEccccccccccccEEEEEEEEcccccEEEEEccccEEEEcccccccccccccccHHHHHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHccHHHcccccccEEccccEEEEcccHHHHHHHHHHHHHHHHccccEEEEEccHHHHHHHHHHccccHHHEEEEEccHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHccccccccHHHHHHHHHHccccHHHHHHHHccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccccEEEEEEEEccccEEEEEcccccccccccccccccccc //