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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : cdd
DDBJ      :cdd          cytidine deaminase
Swiss-Prot:             

Homologs  Archaea  21/68 : Bacteria  381/915 : Eukaryota  140/199 : Viruses  0/175   --->[See Alignment]
c.97.1
:134 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   24->132 1ux0A PDBj 3e-22 44.0 %
:RPS:PDB   24->129 3dmoB PDBj 9e-22 36.8 %
:RPS:SCOP  24->129 1wn5A1  c.97.1.1 * 1e-30 30.1 %
:HMM:SCOP  3->132 2fr5A1 c.97.1.1 * 1e-40 45.7 %
:RPS:PFM   24->83 PF08211 * dCMP_cyt_deam_2 6e-07 39.0 %
:HMM:PFM   8->105 PF00383 * dCMP_cyt_deam_1 2.7e-18 34.1 91/102  
:BLT:SWISS 24->132 CDD_BACPY 3e-22 45.0 %
:PROS 57->97|PS00903|CYT_DCMP_DEAMINASES
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK85951.2 GT:GENE cdd GT:PRODUCT cytidine deaminase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 134652..135056 GB:FROM 134652 GB:TO 135056 GB:DIRECTION + GB:GENE cdd GB:PRODUCT cytidine deaminase GB:PROTEIN_ID AAK85951.2 GB:DB_XREF GI:159139506 GB:GENE:GENE cdd LENGTH 134 SQ:AASEQ MSSDPKSHALFEAAVEAMAFAYAPYSKFPVGAAIRAEDGKIYTGANIENISFPQGWCAEPSAISAMIMGGAKKISEVAVIAEKLPLCSPCGGCRQKIAEFATPETKIYLCDETGVQKVMTMEELLPSVFKTELP GT:EXON 1|1-134:0| BL:SWS:NREP 1 BL:SWS:REP 24->132|CDD_BACPY|3e-22|45.0|109/136| PROS 57->97|PS00903|CYT_DCMP_DEAMINASES|PDOC00702| SEG 9->23|alfeaaveamafaya| BL:PDB:NREP 1 BL:PDB:REP 24->132|1ux0A|3e-22|44.0|109/130| RP:PDB:NREP 1 RP:PDB:REP 24->129|3dmoB|9e-22|36.8|106/127| RP:PFM:NREP 1 RP:PFM:REP 24->83|PF08211|6e-07|39.0|59/124|dCMP_cyt_deam_2| HM:PFM:NREP 1 HM:PFM:REP 8->105|PF00383|2.7e-18|34.1|91/102|dCMP_cyt_deam_1| GO:PFM:NREP 2 GO:PFM GO:0004126|"GO:cytidine deaminase activity"|PF08211|IPR013171| GO:PFM GO:0008270|"GO:zinc ion binding"|PF08211|IPR013171| RP:SCP:NREP 1 RP:SCP:REP 24->129|1wn5A1|1e-30|30.1|103/125|c.97.1.1| HM:SCP:REP 3->132|2fr5A1|1e-40|45.7|129/0|c.97.1.1|1/1|Cytidine deaminase-like| OP:NHOMO 594 OP:NHOMOORG 542 OP:PATTERN 111-111----------111111-11111111----------------1------------------- 1-1-11------1-11111-31111111111111111111---11-111111111111--1111111111--------1---1----------111---1111111--1-------------------------1-11111---1---1---1----1-1----2------------------1111111-111222222221222222111111222111-11211111111111111111111111111111-11111--------11---11111111111111111221112111211111111111111111111111111121111111111111111111121111111111111111111111-11-1111------11-----------------------1111111111--111111111111---1-1111111111---------11---1-------------------------------1-11-------1111-11-11--1-1111-11-1---------------------------1--------------1-----1---------1-----1-----11-------------------------------11--1-1-1---------------------------------------------------------------------------------------------1------------------------------1111---11--------------------------------------------111111111----1----------------------------------11-111111-1----1-11-11-11111-111111111111111-1-1- ----11--2--111-1111-11111--111-111221111-111-1111111111111-1111-11111111-11111111-11--11-122111211-1--1111-1-1113332-1-1-11111111121-111-11-1111--111111-11111-22113121311222111-------------1--------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 109 STR:RPRED 81.3 SQ:SECSTR #######################TTTccccEEEEEETTccEEEEEccccccGGGcccHHHHHHHHHHHTTcccEEEEEEEEcccccccccHHHHHHHHHHHcTTcEEEEEETTccEEEEEHHHHcTTcccGG## DISOP:02AL 1-2,131-135| PSIPRED ccccHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccEEEEEEEEcccccccHHHHHHHHHHHHHccccEEEEEEEEccccccccccHHHHHHHHHHcccccEEEEEcccccEEEEEHHHHcccccccccc //