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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : cheD.2
DDBJ      :cheD         methyl-accepting chemotaxis protein
Swiss-Prot:             

Homologs  Archaea  12/68 : Bacteria  460/915 : Eukaryota  9/199 : Viruses  0/175   --->[See Alignment]
c.13.2d.110.3d.92.1h.4.5
:590 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   27->242 3ewkA PDBj 2e-16 27.1 %
:BLT:PDB   344->515 1qu7B PDBj 1e-24 48.8 %
:RPS:PDB   24->249 3caxA PDBj 4e-22 6.4 %
:RPS:PDB   280->544 2ch7A PDBj 2e-33 20.0 %
:RPS:SCOP  13->124 2ookA1  c.13.2.2 * 8e-28 13.5 %
:RPS:SCOP  135->246 2ookA1  c.13.2.2 * 2e-23 14.2 %
:RPS:SCOP  346->544 3cmnA1  d.92.1.16 * 2e-22 7.7 %
:HMM:SCOP  18->121 1g28A_ d.110.3.6 * 4.9e-30 35.0 %
:HMM:SCOP  139->243 1g28A_ d.110.3.6 * 1.6e-26 30.8 %
:HMM:SCOP  264->545 2ch7B1 h.4.5.1 * 1.7e-69 47.3 %
:RPS:PFM   18->126 PF08448 * PAS_4 1e-06 31.8 %
:RPS:PFM   150->246 PF08448 * PAS_4 7e-08 32.3 %
:RPS:PFM   363->545 PF00015 * MCPsignal 1e-20 42.1 %
:HMM:PFM   277->352 PF00015 * MCPsignal 0.00019 22.2 72/213  
:HMM:PFM   348->545 PF00015 * MCPsignal 1.6e-59 48.9 188/213  
:HMM:PFM   33->118 PF08447 * PAS_3 6.2e-18 28.6 84/91  
:HMM:PFM   142->246 PF08448 * PAS_4 5.6e-15 23.3 103/110  
:BLT:SWISS 16->247,348->492 BDLA_PSEAE 1e-58 48.3 %
:COIL
:REPEAT 2|6->122|127->244
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88340.2 GT:GENE cheD.2 GT:PRODUCT methyl-accepting chemotaxis protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2601286..2603058 GB:FROM 2601286 GB:TO 2603058 GB:DIRECTION + GB:GENE cheD GB:PRODUCT methyl-accepting chemotaxis protein GB:PROTEIN_ID AAK88340.2 GB:DB_XREF GI:159140553 GB:GENE:GENE cheD LENGTH 590 SQ:AASEQ MLGLGKSADNRNMLDAISRSQAVIEFDLKGNILTANRNFCMALGYDLAEIVGKHHRIFCDREIAASHAYQEFWESLARGEFQAKEYRRIRKDGSAVWIEASYNPVFRSGKPYKVVKIATDITAKRIKAVEDAGKLEALSRSQATIEFFPDGTIITANPNFCATVNYDLKEIEGKHHRMFCDPAYTASAAYANFWQRLASGEFISDEFVRYGKNGKEIWIQAAYNPVLDEAGKVVKVVKFATDVTPRMSAITVLADALQALAAGDLVQRLDTSFVPSMEKLRADFNEVVGKLQATMQTISHNASTIASGSGEIRIAADQLSQRTEQQAASLEETAAALEEITTTVTDASQRAAEAGKLVLRTREHAEHSGDVVQQAISAMDAISRSSGEITNIIGVIDDIAFQTNLLALNAGVEAARAGEAGKGFAVVAQEVRELAQRSAVAAKEIKSLINTSREQVANGVDLVGRTGGALRDIQSQMGEIDINVSAIVEASREQANGLKEINQAVNVMDQATQKNAAMVEETTAASHGLASEADNLYVLLRQFKISGDGQISSAQPIDKKAASISRLPTPQPRYATARAHGNAAAEWAEF GT:EXON 1|1-590:0| BL:SWS:NREP 1 BL:SWS:REP 16->247,348->492|BDLA_PSEAE|1e-58|48.3|374/417| COIL:NAA 34 COIL:NSEG 1 COIL:REGION 321->354| NREPEAT 1 REPEAT 2|6->122|127->244| SEG 252->267|vladalqalaagdlvq| SEG 323->343|teqqaasleetaaaleeittt| SEG 410->425|agveaarageagkgfa| BL:PDB:NREP 2 BL:PDB:REP 27->242|3ewkA|2e-16|27.1|214/227| BL:PDB:REP 344->515|1qu7B|1e-24|48.8|172/221| RP:PDB:NREP 2 RP:PDB:REP 24->249|3caxA|4e-22|6.4|219/355| RP:PDB:REP 280->544|2ch7A|2e-33|20.0|265/309| RP:PFM:NREP 3 RP:PFM:REP 18->126|PF08448|1e-06|31.8|108/111|PAS_4| RP:PFM:REP 150->246|PF08448|7e-08|32.3|96/111|PAS_4| RP:PFM:REP 363->545|PF00015|1e-20|42.1|183/210|MCPsignal| HM:PFM:NREP 4 HM:PFM:REP 277->352|PF00015|0.00019|22.2|72/213|MCPsignal| HM:PFM:REP 348->545|PF00015|1.6e-59|48.9|188/213|MCPsignal| HM:PFM:REP 33->118|PF08447|6.2e-18|28.6|84/91|PAS_3| HM:PFM:REP 142->246|PF08448|5.6e-15|23.3|103/110|PAS_4| GO:PFM:NREP 3 GO:PFM GO:0004871|"GO:signal transducer activity"|PF00015|IPR004089| GO:PFM GO:0007165|"GO:signal transduction"|PF00015|IPR004089| GO:PFM GO:0016020|"GO:membrane"|PF00015|IPR004089| RP:SCP:NREP 3 RP:SCP:REP 13->124|2ookA1|8e-28|13.5|111/125|c.13.2.2| RP:SCP:REP 135->246|2ookA1|2e-23|14.2|110/125|c.13.2.2| RP:SCP:REP 346->544|3cmnA1|2e-22|7.7|195/294|d.92.1.16| HM:SCP:REP 18->121|1g28A_|4.9e-30|35.0|103/0|d.110.3.6|1/3|PYP-like sensor domain (PAS domain)| HM:SCP:REP 139->243|1g28A_|1.6e-26|30.8|104/0|d.110.3.6|2/3|PYP-like sensor domain (PAS domain)| HM:SCP:REP 264->545|2ch7B1|1.7e-69|47.3|264/0|h.4.5.1|1/1|Methyl-accepting chemotaxis protein (MCP) signaling domain| OP:NHOMO 3444 OP:NHOMOORG 481 OP:PATTERN ------------------------4675--22-----------1--13--112--------------- 124-----------------------------------------1---2---------------6---------------1------------------------1--3-------------------------3-111------1237144-1133------22213231--------------2-----144222224-45312453146656222112933322222268------------------------------------------------------------------------------------------1122922221124-42-111---A-6--13331A824532211---1---521EII7-----4169F2236D87B------------4464433B11--HKKkRRIQUU99J-2-4-3-56655J---------B873-F39-------------------------------51-398655JIJFIGlGEFEEDRQKKKLBJGQTDMEE--FEMMAcIHX--O82BJD769AI6-------331-A8L86-88842D9221-EFFABCAEC34154342T1-1-111111---------52-1---D712384613-25654-31744543-3568--12234------EPgf8IC5554543455-5545533535535555553---bc228877588888775855862424444--E67788878887---1-----111131ADC---------------111111-1119766668DAC487789CCC---------C-35688888-2333BBIHMHJ8A9------Eb662222111--1-13-----------------------------1-1------B- ------------------------------------------------------------------------------------------------------------1-------------------------------------------------1----1---------1---------111--6-----4---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 562 STR:RPRED 95.3 SQ:SECSTR #####TTTHHHHHHccccHccGcHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHcHHHHHHHHHHGGGTcccccccccccccTTcccccGGGccccccHHHHHHccHHHTTccccccccccccTTcEEccccEEcHHHHHcccEEEEEcTTccEEEEccccccccccGGGTTccTTTcccGGGHHHHHTcHHHHHHHHHHHHHTccccEEEEEEETTEEEEEEEEEEEcTTccEEEEEEEEEEcHHHHTc##################cTcccHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccTTcccccHHHHHHHHHHHccHGGGcccTTcGGGcccHHH##### DISOP:02AL 1-8,301-332,348-389,438-438,440-467,494-494,512-536,542-589| PSIPRED cccccHHHHHHHHHHHHHHccEEEEEccccEEEEEcHHHHHHHcccHHHHccccccccccccccccHHHHHHHHHHHcccccHHHHHHHcccccEEEEEEEEEEEEEccEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHcccEEEEcccccEEcccHHHHHHHcccHHHHccccHHHHccHHHHccHHHHHHHHHHHcccHHHHHHHHccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHccHHHHccHHHHHccccccccccccccccc //