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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : cobC
DDBJ      :cobC         cobalamin biosynthetic protein
Swiss-Prot:             

Homologs  Archaea  44/68 : Bacteria  627/915 : Eukaryota  65/199 : Viruses  0/175   --->[See Alignment]
c.67.1
:348 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->296 1lkcA PDBj 2e-18 30.6 %
:RPS:PDB   15->342 2douA PDBj 8e-23 22.3 %
:RPS:SCOP  26->341 1fg3A  c.67.1.1 * 1e-40 25.3 %
:HMM:SCOP  10->342 1lc5A_ c.67.1.1 * 2.9e-53 30.9 %
:RPS:PFM   81->311 PF00155 * Aminotran_1_2 2e-13 35.5 %
:HMM:PFM   55->304 PF00155 * Aminotran_1_2 2.9e-31 24.1 249/363  
:BLT:SWISS 13->324 COBC_PSEDE 3e-41 37.3 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88523.1 GT:GENE cobC GT:PRODUCT cobalamin biosynthetic protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2813348..2814394 GB:FROM 2813348 GB:TO 2814394 GB:DIRECTION + GB:GENE cobC GB:PRODUCT cobalamin biosynthetic protein GB:PROTEIN_ID AAK88523.1 GB:DB_XREF GI:15158038 GB:GENE:GENE cobC LENGTH 348 SQ:AASEQ MGETVPEKAQGAIRHGGNLGKARLMFRQAPEPWIDLSTGINPHSYPHSPIPASAFARLPEPGAAEELKQLAAAHFGAPSAQHVTLSPGTQMLMPLLAQIAINRGAQSGAVLSPAYAEHARTARMAGLTVTEVENIGDLSAYGYAVVVNPNNPDGRITDREALLALAGTIGRKGGLLVVDEAFIETGGAESLAVATNGEALVVLRSFGKFYGMAGVRLGFAIAHPEIAAELEARLGPWAVSGPALHIATEALADREWQSSMRLRLAEEARRMNELLEKAGLKIAGGTSLFTLVRDERSRALFGHLGRRGILVRIFDERPDDMRFGLPGSEADWQRVEEALRSFDHSSKV GT:EXON 1|1-348:0| BL:SWS:NREP 1 BL:SWS:REP 13->324|COBC_PSEDE|3e-41|37.3|306/333| BL:PDB:NREP 1 BL:PDB:REP 15->296|1lkcA|2e-18|30.6|271/355| RP:PDB:NREP 1 RP:PDB:REP 15->342|2douA|8e-23|22.3|327/372| RP:PFM:NREP 1 RP:PFM:REP 81->311|PF00155|2e-13|35.5|228/341|Aminotran_1_2| HM:PFM:NREP 1 HM:PFM:REP 55->304|PF00155|2.9e-31|24.1|249/363|Aminotran_1_2| GO:PFM:NREP 3 GO:PFM GO:0009058|"GO:biosynthetic process"|PF00155|IPR004839| GO:PFM GO:0016769|"GO:transferase activity, transferring nitrogenous groups"|PF00155|IPR004839| GO:PFM GO:0030170|"GO:pyridoxal phosphate binding"|PF00155|IPR004839| RP:SCP:NREP 1 RP:SCP:REP 26->341|1fg3A|1e-40|25.3|312/355|c.67.1.1| HM:SCP:REP 10->342|1lc5A_|2.9e-53|30.9|327/0|c.67.1.1|1/1|PLP-dependent transferases| OP:NHOMO 1162 OP:NHOMOORG 736 OP:PATTERN ---1---111-111-1-222-11221112221--1--------1111123222-1213322-1-1-21 -1413122111-1-33311-11--331111121333-31-11-11-21111--321-----12221-3323---------12-1-21111-1-322---1----3213-1---------------22122222222211-1113-12121222----222211-21323212122122121222-1-1-1-22122222222122222212111-2222222211222222221111111-111111121112----22-1---111122---12-----------111------------------------211--111111311211111-1-1-23--2---112--213132232122112222---2321133------213321111111111111111111-21211111151-311333322333-1231112222233322222222-1122221-----------------------------1-21-31---11222211222211222223332123333-1333111---1--1-331221313111111112124213-21121122111-22242221211212411-----1------1-------1---1111122111121211111111111111111211---13-11111121112111111111111-1111111111111111111232221212212222222222222111111111-21111111111111-1-----222222212222222-22111112-------11141333333343333333331--------1---1-------2--224242311211112-2---11-1--------1--------------------------------1-111122 ------1-----11111-1--1-1-1--1-1--11-1------11111-1-1111--1----1-1--11-111--11111111---11--1111--11111-11----2-------------------------------------------------------------1-----------1---12112---21-1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 347 STR:RPRED 99.7 SQ:SECSTR cGcccccccTTcTTHHHHHHHHHHHHHHTTcccEEcccccccccccHHHHHHGGGcccccHHHHHHHHHHHHHHHHccTTTcEEEEccHHHHHHHHHHHHHccTTcEEEEEccccHHHHHHHHHTTcEEEcTTccccGGGccHHEEccccTTTcccccHHHHHHHHHHHHHTTcEEEEEcTTGGGccccGGGcTTGGGTEEEEEEHHHHHTcGGGccEEEEEcHHHHHHHHHHHHHccccHHHHHHHHHHHTcHHHHHHHHHHHHHHHHHHHHHHTTTcEEccccEEEEEccTTccHHHHHHHHHHTTEEcEGcGGGTTEEEEEccccHHHHHHHHHHHHHTcccHH# DISOP:02AL 1-3, 347-348| PSIPRED cccccccccHHHHHccccHHHHHHHHccccccEEEcccccccccccHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHEEEEEccHHHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHcccEEEEEccccccccccEEEEEcccccccccccHHHHHHHHHHHHccccEEEEEEEEEEccccccccHHHccccEEEEcccHHHHccHHHHHHHHcccHHHHHHHHHHHccccccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcccccEEEEEcccHHHHHHHHHHcccEEEEccccccEEEEEEEccHHHHHHHHHHHHHHHHHHcc //