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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : cobD
DDBJ      :cobD         cobalamin biosynthesis protein
Swiss-Prot:             

Homologs  Archaea  47/68 : Bacteria  383/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:321 amino acids
:PSIPRED
:RPS:PFM   8->284 PF03186 * CobD_Cbib 2e-44 39.8 %
:HMM:PFM   4->304 PF03186 * CobD_Cbib 1e-99 48.8 289/292  
:BLT:SWISS 3->286 COBD_RHISN 3e-60 47.9 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88522.1 GT:GENE cobD GT:PRODUCT cobalamin biosynthesis protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2812384..2813349) GB:FROM 2812384 GB:TO 2813349 GB:DIRECTION - GB:GENE cobD GB:PRODUCT cobalamin biosynthesis protein GB:PROTEIN_ID AAK88522.1 GB:DB_XREF GI:15158037 GB:GENE:GENE cobD LENGTH 321 SQ:AASEQ MFFALAFLSLVIERLTGYPDWLFKRIGHPVTWIGSLIALMDKKWNRESASFSQRKAAGVAALVVFVGLTVILAWFAQSVLLFLPFGLLAVAIFGASLPAQQSLEQHVEAVATALEREGVEGGRKAVSMIVGRDPQKLDEAAICRAAIESLAENFSDGIVAPAFWLGFLGLPGGAAYKAINTADSMIGHRSPRHEAFGWASARLDDLVNLPASRLSGSLFVVAAFFVEGASPKAAIAAIRRDARHHRSPNAGWPEAALAGALGFALAGPRSYGGQMIEARFMGEGGRSALVAGDIRKALRLARIADLLLIGLFGLLAILIAL GT:EXON 1|1-321:0| BL:SWS:NREP 1 BL:SWS:REP 3->286|COBD_RHISN|3e-60|47.9|284/326| TM:NTM 6 TM:REGION 2->23| TM:REGION 26->41| TM:REGION 57->79| TM:REGION 81->103| TM:REGION 208->230| TM:REGION 300->321| SEG 56->68|aagvaalvvfvgl| SEG 233->246|aaiaairrdarhhr| SEG 255->267|aalagalgfalag| SEG 294->320|irkalrlariadllliglfgllailia| RP:PFM:NREP 1 RP:PFM:REP 8->284|PF03186|2e-44|39.8|264/290|CobD_Cbib| HM:PFM:NREP 1 HM:PFM:REP 4->304|PF03186|1e-99|48.8|289/292|CobD_Cbib| GO:PFM:NREP 2 GO:PFM GO:0009236|"GO:cobalamin biosynthetic process"|PF03186|IPR004485| GO:PFM GO:0016021|"GO:integral to membrane"|PF03186|IPR004485| OP:NHOMO 440 OP:NHOMOORG 430 OP:PATTERN -------111111111-11----1----11-11111111111111111111111111111-11---11 ---11-11----1-11111-11--1111111111111111-111----------------11111111111----------1------11-1-111---------1-1-----------------11111111111111113241-1111111111111111--11111111111-1-1111-1-1------1-----------------1-------1111---11111111---------------------------------11---------------------------------------------1----------1111111111111111111111111--1111111111--111211--1111-1--------11111---1111111111111111-21111111-1--1111111111111111-111111111111111111-11-1121-------------------------------1--------11111111111111111111111111-1--111-111111111-11111111-----------111-1111-11111111-111111111-----1-1-----------------------------1-1-1-1-------------------1-----11-------1---1--------------------------------111--11-1111111111111111----------1------------------------111-1-------------------------1111111111111111111---------------------1----11111---------1---1111--------1---------------------------1--11-1-----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PSIPRED cHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccHHHccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccHHHHHHHHHHcccccccEEEccEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc //