[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : cobT.1
DDBJ      :cobT         cobyrinic acid synthase
Swiss-Prot:COBT_AGRT5   RecName: Full=Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase;         Short=NN:DBI PRT;         EC=2.4.2.21;AltName: Full=N(1)-alpha-phosphoribosyltransferase;

Homologs  Archaea  0/68 : Bacteria  433/915 : Eukaryota  2/199 : Viruses  0/175   --->[See Alignment]
c.39.1
:344 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->302 1d0sA PDBj 1e-24 27.2 %
:RPS:PDB   11->302 1d0sA PDBj 3e-47 29.8 %
:RPS:SCOP  25->334 1j33A  c.39.1.1 * 7e-67 36.0 %
:HMM:SCOP  11->337 1d0vA_ c.39.1.1 * 3.9e-108 50.6 %
:RPS:PFM   21->302 PF02277 * DBI_PRT 1e-39 43.6 %
:HMM:PFM   15->334 PF02277 * DBI_PRT 1.8e-130 55.0 320/327  
:BLT:SWISS 1->344 COBT_AGRT5 e-163 100.0 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87655.2 GT:GENE cobT.1 GT:PRODUCT cobyrinic acid synthase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1869149..1870183) GB:FROM 1869149 GB:TO 1870183 GB:DIRECTION - GB:GENE cobT GB:PRODUCT cobyrinic acid synthase GB:PROTEIN_ID AAK87655.2 GB:DB_XREF GI:159140246 GB:GENE:GENE cobT LENGTH 344 SQ:AASEQ MSMSGLPFDDFRALLRELPGPDTHALVAAKERNAQLTKPAGSLGRLEEIAMWLAAWSGRSPAVTRPLVAIFAGNHGVTRHGVTPYPTSVTQQMVENFAAGGAAINQICVANDLGLKIFDLALDYPTGDITCEPALSERDCAATMAFGMEAIAGGTDLLCVGEMGIGNTTIAAAINLALYGGTAEEWTGPGTGSEGEVMARKIAAVKAAVEFHKDHLSDPLEIMRRLGGREIAAIAGAILAARVQRIPVLIDGYVATAAAALLKAANSSALDHCLIGHVSGEPGHLAAVEKLGKTPLLALGMRLGEGTGAALAAGIVKAAAACHSGMATFEAAGVDTRISPRTEH GT:EXON 1|1-344:0| SW:ID COBT_AGRT5 SW:DE RecName: Full=Nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase; Short=NN:DBI PRT; EC=2.4.2.21;AltName: Full=N(1)-alpha-phosphoribosyltransferase; SW:GN Name=cobT; OrderedLocusNames=Atu1890; ORFNames=AGR_C_3467; SW:KW Cobalamin biosynthesis; Complete proteome; Glycosyltransferase;Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->344|COBT_AGRT5|e-163|100.0|344/344| GO:SWS:NREP 3 GO:SWS GO:0009236|"GO:cobalamin biosynthetic process"|Cobalamin biosynthesis| GO:SWS GO:0016757|"GO:transferase activity, transferring glycosyl groups"|Glycosyltransferase| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| TM:NTM 1 TM:REGION 245->267| SEG 224->242|rrlggreiaaiagailaar| SEG 255->270|ataaaallkaanssal| SEG 303->321|lgegtgaalaagivkaaaa| BL:PDB:NREP 1 BL:PDB:REP 13->302|1d0sA|1e-24|27.2|290/346| RP:PDB:NREP 1 RP:PDB:REP 11->302|1d0sA|3e-47|29.8|292/346| RP:PFM:NREP 1 RP:PFM:REP 21->302|PF02277|1e-39|43.6|282/335|DBI_PRT| HM:PFM:NREP 1 HM:PFM:REP 15->334|PF02277|1.8e-130|55.0|320/327|DBI_PRT| GO:PFM:NREP 2 GO:PFM GO:0008939|"GO:nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity"|PF02277|IPR003200| GO:PFM GO:0009236|"GO:cobalamin biosynthetic process"|PF02277|IPR003200| RP:SCP:NREP 1 RP:SCP:REP 25->334|1j33A|7e-67|36.0|308/333|c.39.1.1| HM:SCP:REP 11->337|1d0vA_|3.9e-108|50.6|324/346|c.39.1.1|1/1|Nicotinate mononucleotide:5,6-dimethylbenzimidazole phosphoribosyltransferase (CobT)| OP:NHOMO 461 OP:NHOMOORG 435 OP:PATTERN -------------------------------------------------------------------- ---12-1111112-11111-111111111111111111111111----------------11221111121----------11-----11-1-111-----11--1-1-----------------11111111111111111121---------------------------------------1111---11--------------1--1-------1111---------11---------------------------------11---------------------------------------------1----------1-11-------1-111111111111----111111111--12-----1111-211-111-111111---2122211111111111-21111111121-1111111111111122-111111111111111111-11-1111-------------------------------1--------1111111111111111111111111111--1111311111111-111111111----------111-1211-11111111-111211111-----1-1-----------------------------2-111-11-11111-1111111111111----11-------1---1--1111111111-111111111111111111-222--11-1111111111111111-1111111--1------------------------111-1---------------11111---111111111111111111111-------------11111111111--11111111------1-111111--------1---------------------------11-22-1-----1 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-------------1------ ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 292 STR:RPRED 84.9 SQ:SECSTR ##########cHHHHHTcccccHHHHHHHHHHHHTccccTTTTTHHHHHHHHHHTcGGTcccccEEEEEEEEEccGGGGGTcccccTTHHHHHHHHHHHTccHHHHHHHHTTcEEEEEEcccccccccTTTcccccHHHHHHHHHHHHHHHTTTEEEEEEEEEcTTTHHHHHHHHHHHHTccHHHHcccTTTccGGGHHHHHHHHHHHHHHHcccTTcHHHHHHHHccHHHHHHHHHHHHHHHTTccEEcccHHHHHHHHHHHHHcGGGGGGEEcccccccTTHHHHHHHTTcccccccccc########################################## DISOP:02AL 1-5,335-345| PSIPRED cccccccHHHHHHHHHHcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccEEEEEEcccHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHHccccHHHHccccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHccHHHHHHHHHHHHHHHcccEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccccccccccHHHHHHHHHHHHHHHHHcccccHHHHcccccccccccc //