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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : cobW.1
DDBJ      :cobW         cobalamin synthesis protein
Swiss-Prot:             

Homologs  Archaea  8/68 : Bacteria  520/915 : Eukaryota  166/199 : Viruses  0/175   --->[See Alignment]
c.37.1d.237.1
:345 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   8->330 1nijA PDBj 7e-23 30.0 %
:RPS:PDB   61->235 2egzA PDBj 2e-16 8.2 %
:RPS:SCOP  11->43 1yr6A1  c.37.1.10 * 4e-04 30.3 %
:RPS:SCOP  256->345 1nijA2  d.237.1.1 * 1e-16 27.3 %
:HMM:SCOP  6->253 1nijA1 c.37.1.10 * 1.9e-32 26.7 %
:HMM:SCOP  254->347 1nijA2 d.237.1.1 * 3.6e-20 37.0 %
:RPS:PFM   11->213 PF02492 * cobW 8e-26 43.5 %
:RPS:PFM   283->345 PF07683 * CobW_C 7e-05 40.3 %
:HMM:PFM   9->213 PF02492 * cobW 3.8e-53 47.4 171/173  
:HMM:PFM   254->345 PF07683 * CobW_C 7e-22 40.4 89/94  
:BLT:SWISS 7->345 COBW_PSEDE 1e-82 51.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88518.1 GT:GENE cobW.1 GT:PRODUCT cobalamin synthesis protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2808391..2809428) GB:FROM 2808391 GB:TO 2809428 GB:DIRECTION - GB:GENE cobW GB:PRODUCT cobalamin synthesis protein GB:PROTEIN_ID AAK88518.1 GB:DB_XREF GI:15158031 GB:GENE:GENE cobW LENGTH 345 SQ:AASEQ MSTLLDRVPCTIVTGFLGAGKTTLLRGLLEKLDGKRLAIIVNEFGDIGIDGEILKGCGIESCPEENIVELANGCICCTVADDFQPAIEQILSRQPKVEHILIETSGLALPKPLVQAFQWPAIKSRVTVDAVVAVVDGAALAEGQVAHDMEALAAQRANDEALDHDDPVEEVFEDQVACADLIVLTKADLLDDAGLEKAKAHILEHLPKAAKIVVASNGAIDPTVLIGLGLAVEEDIENRRTHHDGELDHEHDDFDSFVIDLPAVTDPEALAARIAQTAAAENVLRIKGFIEVATKPMRLQVQAVGSRVNHYYDRPWAAGEERRSRLVVIGEKGINREKIEQMLAA GT:EXON 1|1-345:0| BL:SWS:NREP 1 BL:SWS:REP 7->345|COBW_PSEDE|1e-82|51.0|339/354| SEG 128->141|vdavvavvdgaala| SEG 242->255|hhdgeldhehddfd| SEG 269->280|alaariaqtaaa| BL:PDB:NREP 1 BL:PDB:REP 8->330|1nijA|7e-23|30.0|290/317| RP:PDB:NREP 1 RP:PDB:REP 61->235|2egzA|2e-16|8.2|170/216| RP:PFM:NREP 2 RP:PFM:REP 11->213|PF02492|8e-26|43.5|170/174|cobW| RP:PFM:REP 283->345|PF07683|7e-05|40.3|62/92|CobW_C| HM:PFM:NREP 2 HM:PFM:REP 9->213|PF02492|3.8e-53|47.4|171/173|cobW| HM:PFM:REP 254->345|PF07683|7e-22|40.4|89/94|CobW_C| RP:SCP:NREP 2 RP:SCP:REP 11->43|1yr6A1|4e-04|30.3|33/244|c.37.1.10| RP:SCP:REP 256->345|1nijA2|1e-16|27.3|88/95|d.237.1.1| HM:SCP:REP 6->253|1nijA1|1.9e-32|26.7|217/222|c.37.1.10|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 254->347|1nijA2|3.6e-20|37.0|92/95|d.237.1.1|1/1|Hypothetical protein YjiA, C-terminal domain| OP:NHOMO 1782 OP:NHOMOORG 694 OP:PATTERN ------------------------2---2-24------1-----------421--------------- -----11-11111-2-2----1---2------21112331-1-11----------1----12--2--111--------1--2111-1----1-------------2-11-----------------------1---32122---5-CB43444332232332222235433324333333333331------21333333332323331233311332---1322------21233333333333333333311-------------------------------------------------------------------------211111111111-11111111--1-11--121------------111-21111-22-2343552224324344444444444-5464444523--55556638775554---33512332322222222211133212-------------------------------11--35422455654333335573333333633244211223121117111332151311111111111---12------11111111--------1------11-2---------1-1-1111111-------111-122-2-111111-1111111111111----21-------42322212113233322-221222222223222122222523--1222222222222222231211121--111111111111--------------2313---------------22222-211-424444465735454255511111111121221111112113111111111111111--3111---------------------------------------------------1- --11224-211-22233322333333221212222233223332221233223233311122222122111121111-1111111121-2323222232122133--3U52-21112----11-13-8-cd5-8381---11111111-11-12-2111---1212-------111785*864873237332475664E ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 322 STR:RPRED 93.3 SQ:SECSTR #######EEEEEEEEccccccHHHHHHHHHccccccEEEEccccccccEEEEEEcTTccETHHHHHHHHHHHTccEEEEEGGGcccccHHHHHHHHHHHHHHTTcEEEEEGGGTccccTTHHHHHHEEEEETTcHHHHHHHHHHHHHTTcEEEEEEEEccccccHHHHHHHHHHHHHTTcEEEEEEEcccHHHHHHHHHHHHHHHTTcccccEEEEEccGGGGHHHGGTccEEEcccccccccccTGGGGccEEEEEEEcccccHHHHHHHHHHHHHHTTTTEEEEEEEEccTTccEEEEEEEETTEEEEEEEEEc#TTccccEEEEEEE############### DISOP:02AL 1-5| PSIPRED cccccccccEEEEEccccccHHHHHHHHHHcccccEEEEEEEccccccccHHHHHHccccccccccEEEccccEEEEcccHHHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHcccccccEEEEEEEEEEEcHHHHHHHHcccccHHHHHHHcccccccccccHHHHHHHHHHHccEEEEEccccccHHHHHHHHHHHHHHcccccEEEEEEcccccHHHHcccccccccHHHccccccccccccccccEEEEEEEEcccccHHHHHHHHHHHHccccEEEEEEEEEEcccccEEEEEEcccEEEEccccccccccccccEEEEEccccccHHHHHHHHcc //