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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : cpdB
DDBJ      :cpdB         putative 2,3-cyclic nucleotide 2-phosphodiesterase/3-nucleotidase
Swiss-Prot:             

Homologs  Archaea  2/68 : Bacteria  404/915 : Eukaryota  67/199 : Viruses  0/175   --->[See Alignment]
d.114.1d.159.1
:662 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   45->383 3jyfA PDBj 4e-77 47.9 %
:BLT:PDB   546->595 1ceqA PDBj 8e-04 42.0 %
:RPS:PDB   42->614 3c9fA PDBj 3e-58 15.2 %
:RPS:SCOP  42->375 2z1aA2  d.159.1.2 * 1e-32 25.2 %
:RPS:SCOP  381->619 2z1aA1  d.114.1.1 * 1e-40 18.4 %
:HMM:SCOP  34->383 1hp1A2 d.159.1.2 * 3.1e-87 39.6 %
:HMM:SCOP  384->621 1hp1A1 d.114.1.1 * 6.2e-50 36.6 %
:RPS:PFM   385->582 PF02872 * 5_nucleotid_C 3e-20 42.9 %
:HMM:PFM   384->578 PF02872 * 5_nucleotid_C 3.2e-29 36.1 133/151  
:HMM:PFM   42->284 PF00149 * Metallophos 1.3e-22 18.9 190/200  
:BLT:SWISS 42->641 CN16_SALTY e-163 50.9 %
:PROS 128->139|PS00786|5_NUCLEOTIDASE_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87012.1 GT:GENE cpdB GT:PRODUCT putative 2,3-cyclic nucleotide 2-phosphodiesterase/3-nucleotidase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1203727..1205715) GB:FROM 1203727 GB:TO 1205715 GB:DIRECTION - GB:GENE cpdB GB:PRODUCT putative 2,3-cyclic nucleotide 2-phosphodiesterase/3-nucleotidase GB:PROTEIN_ID AAK87012.1 GB:DB_XREF GI:15156256 GB:GENE:GENE cpdB LENGTH 662 SQ:AASEQ MSSLLALHPITRRSLLGGIAASSALVLLHPFAARAAANQAHLRIMETTDIHVHVFPYDYYADKPNDTMGLSRTASIIDKIRAEAGNSMLVDNGDFLQGNPLGDYIAYERGMKAGDKHPVINAMNVLGYDCGTLGNHEFNYGLDYMSNTLAGAGFPYVCANLTKGQLASDPKNDELFFKPYVILEKQIRDGGGVTSPVKVGIIGFVPPQIMMWDSKNLEGKAQTRDIVEAAKAWVPVMKEEGADIIIALSHSGIDGKGQTERMENASLYLAAVEGIDAIFTGHQHLVFPGPKTWDGIEGADAVKGTLMGKPAVMAGFWGSHMGLIDLLLEKDGKSWKIVDFTSEARPIYHRDDSRKVVADFTDKPEVLAAAKTDHEAALAYVRRPVGKTSAPLYSYFALVADDPSVQIVSNAQTWYIKDMLKEGQYKDLPVLSAAAPFKSGGRGGADYYTDVPAGDIAIKNVADLYLYPNTVQAVLINGAQVKNWLEMSAGMFNTVEAGAKDAPLLNADFPSYNFDVIDGVTYQIDISKPAKFDKDGKAVNPDSNRIVNLQFNGKPIDPEQKFVVATNNYRASGGGKFPDIAGDKVIFVAPDTNRDVIVRYIIDQGTINPSADANWSFAPVANTTAIFETGPKGRHYAAEIKGAKIEDAGDGAEGFAKFRLVL GT:EXON 1|1-662:0| BL:SWS:NREP 1 BL:SWS:REP 42->641|CN16_SALTY|e-163|50.9|587/647| PROS 128->139|PS00786|5_NUCLEOTIDASE_2|PDOC00627| SEG 32->40|aaraaanqa| BL:PDB:NREP 2 BL:PDB:REP 45->383|3jyfA|4e-77|47.9|317/324| BL:PDB:REP 546->595|1ceqA|8e-04|42.0|50/304| RP:PDB:NREP 1 RP:PDB:REP 42->614|3c9fA|3e-58|15.2|506/531| RP:PFM:NREP 1 RP:PFM:REP 385->582|PF02872|3e-20|42.9|154/158|5_nucleotid_C| HM:PFM:NREP 2 HM:PFM:REP 384->578|PF02872|3.2e-29|36.1|133/151|5_nucleotid_C| HM:PFM:REP 42->284|PF00149|1.3e-22|18.9|190/200|Metallophos| GO:PFM:NREP 2 GO:PFM GO:0009166|"GO:nucleotide catabolic process"|PF02872|IPR008334| GO:PFM GO:0016787|"GO:hydrolase activity"|PF02872|IPR008334| RP:SCP:NREP 2 RP:SCP:REP 42->375|2z1aA2|1e-32|25.2|290/302|d.159.1.2| RP:SCP:REP 381->619|2z1aA1|1e-40|18.4|196/205|d.114.1.1| HM:SCP:REP 34->383|1hp1A2|3.1e-87|39.6|316/0|d.159.1.2|1/1|Metallo-dependent phosphatases| HM:SCP:REP 384->621|1hp1A1|6.2e-50|36.6|186/0|d.114.1.1|1/1|5'-nucleotidase (syn. UDP-sugar hydrolase), C-terminal domain| OP:NHOMO 888 OP:NHOMOORG 473 OP:PATTERN -----------------------11------------------------------------------- --2----11121--------------------------------1-1-----1-1-------12---211-----2----1-1---113322-211---111131--1-1--------------------------11111---2----1---11----------------------------421--111-12336363454545554222222555-2-2221------33-33333333333333122322111111-1111---12---2--111111-----11------------------------1114412221-3121-------3-324--133232---1--------1---1-111-2-11-------------111--11--11-------------1--1-1-11--111211221212-----2222122221--------------1--------------------------------1--------111111-111111--11111111----1--1111-1111-1------3---2---------------11------11---1---1----11--12211---1-------1-11111111--12--22---1----11111122412211213123------1------22221222224255522-222255424225322222332333323344444443433434242333213--311112212211--------------11-2333212-111-1--2---------------------------------------24333233253232----------------13--------------2--------11-1---111----1----2222211111-11 ------------451-111111-------11-1----------1------122211111111------------------------------13-111-1--1------14212-121-1----11-11371-111-------12--------2-1------32211--36--13--1----------------11--- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 599 STR:RPRED 90.5 SQ:SECSTR ########################################EEEEEEEcccTTcTTcccccGGGcccHHHHHHHHHHHHHHHHTTcEEEEEEccccccccHHHHccccTTEEHHHHHTTTHHHHTTccccEEcccGGGcccHHHHHHHHHHHTTTTcccccEEEEEcTTccEEEcccccEEEEcTTTEcTTTccETccEEEEEEcccHHHccccccccTTEEEccHHHHTTcHHHHHHTTccccEEEEEccccccTTTcHHHHHHHHHHHHcTTcEEEEEEcccccEEEEEEETTTEcccTEEcccccTEEEEEEccTTcEEEEEEEccccGGGcccHHHHEEEEEEEccHHHHHHHHTcccccHHHHTccTTcccHHHHHHHHHHHHHHHHTTcEEEEEccccccccccTTcTTcHHHHHHHTTGGGccccTTccEEEEEEGGGGGcccccccEEEEHHHHHHHccccccEEEEEEEHHHHHHHHHHHHccccccccccGGGcccccTTccEEcccccTTccccccEEcccccETTETEcEEcccccccEEEEEEcccccccEEEEEEEGGGHHHHccEEccHHHHHHTTcccccccEEEEcccHHHHHHHHTcTTcccccEEEEcccHHHHHHHHHHc####################### DISOP:02AL 4-7| PSIPRED cccccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEccEEEEEEccccccccccccccHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHccccccccHHHHHHHHHHccccEEEEccHHHHccHHHHHHHHHHccccEEEEEEEEccccccccccccccccEEEEEEEEEEccEEEccEEEEEEEEccHHHHHcccccccccEEEEcHHHHHHHHHHHHHHccccEEEEEEccccccccccccHHHHHHHHHccccEEEEEEccccccccccccccccccccEEccccccEEEEEEccccEEEEEEEEEEEccccEEEEEEEEEEEEEEcccccccHHHHHccccHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccHHHHHHHHHHHHHHHHHHHHHccccccccEEEEcccccccccccccccccccccHHHHHHHHHcccEEEEEEEcHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEEEEEccccccccccEEEEccccccEEEEEEccEEEccccEEEEEEEEEEEcccccccccccccEEEEcccHHHHHHHHHHHccccEEEEccccEEEEEccccEEEEcccHHHHHccccccccEEEccccccccEEEEEEEc //