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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : ctpC
DDBJ      :ctpC         components of type IV pilus
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  123/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
b.85.1
:268 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   27->114 1c89A PDBj 5e-06 13.9 %
:RPS:SCOP  41->113 1xuuA1  b.85.1.1 * 6e-07 14.1 %
:HMM:PFM   46->113 PF08666 * SAF 4.5e-07 19.4 62/63  
:BLT:SWISS 70->159 VL2_HPV08 4e-04 37.5 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86040.1 GT:GENE ctpC GT:PRODUCT components of type IV pilus GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(228073..228879) GB:FROM 228073 GB:TO 228879 GB:DIRECTION - GB:GENE ctpC GB:PRODUCT components of type IV pilus GB:PROTEIN_ID AAK86040.1 GB:DB_XREF GI:15155111 GB:GENE:GENE ctpC LENGTH 268 SQ:AASEQ MKPSRIVILSVALVAAGLAGLVAMQISGAKQVIEKAETIIQKEPTVNVLISSVNLPVGSRLNDSSMRWTPWPQGNVVDSFITQAKRPDAITELAGTVVRLPLFEGEPIRPEKVVDSSTRIMSSLLPAGKRAVATEISVSTGAGGFVLPNDRVDVIMVRKGENGNFLTENVLNNVRVLAIDQQIKEGEDGIAAVVGATATLELTPEQAKIITVAQQMADRLTLALRSVADAQENDTLSAGHLLSGSSGQPEIQVIKSGSIVKSGQGASQ GT:EXON 1|1-268:0| BL:SWS:NREP 1 BL:SWS:REP 70->159|VL2_HPV08|4e-04|37.5|80/518| TM:NTM 1 TM:REGION 5->27| SEG 11->23|valvaaglaglva| SEG 236->247|lsaghllsgssg| RP:PDB:NREP 1 RP:PDB:REP 27->114|1c89A|5e-06|13.9|79/134| HM:PFM:NREP 1 HM:PFM:REP 46->113|PF08666|4.5e-07|19.4|62/63|SAF| RP:SCP:NREP 1 RP:SCP:REP 41->113|1xuuA1|6e-07|14.1|64/68|b.85.1.1| OP:NHOMO 149 OP:NHOMOORG 123 OP:PATTERN -------------------------------------------------------------------- --2--------------------------------------------------------------------------------------------------------------------------11----121---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11---------------1112------132311121111----------1-111113112211111111211122--12111-1111111--------1----1--------------------------------1211------211112--111--1122221121-1111--111-------111------1------------11-------1-1-1-111-2-1----1111-1---1---------------------------------------------1------11-1------------------------------------------------------------------------------------------------------------------1---------------------------------------------------------1------1111------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 80 STR:RPRED 29.9 SQ:SECSTR ##########################EEccTTTcccccccccccccEEEEEcccccccccccTTTcEEEEccccccc########ccccHHHHTTccccccccccEEccTTTcc########################################################################################################################################################## DISOP:02AL 1-2, 31-44, 160-167, 182-194, 266-268| PSIPRED cccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccEEEEEEEEccccccccccHHHHHHEEccHHHccccccccccccccHHHHccEEEEHHccccccccHHHHcccccccHHHHHccccEEEEEEEccccccccEEccccEEEEEEEEcccccHHHHHHHHcccEEEEEccccccccccccccccEEEEEEEcHHHHHHHHHHHHHccEEEEEEEccccccccccccccEEEccccccccEEEEEcccEEcccccccc //