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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : ctpD
DDBJ      :ctpD         component of type IV pilus
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  288/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.102.1
:527 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   294->420 3e0rD PDBj 1e-08 16.1 %
:RPS:SCOP  367->503 2nvpA1  a.102.1.8 * 5e-14 17.3 %
:RPS:PFM   298->474 PF00263 * Secretin 6e-19 35.4 %
:HMM:PFM   297->475 PF00263 * Secretin 2.5e-45 36.0 164/166  
:HMM:PFM   139->187 PF04972 * BON 1.1e-10 26.5 49/64  
:BLT:SWISS 62->491 Y4XJ_RHISN 5e-46 36.0 %
:PROS 420->453|PS00875|T2SP_D
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86039.1 GT:GENE ctpD GT:PRODUCT component of type IV pilus GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(226493..228076) GB:FROM 226493 GB:TO 228076 GB:DIRECTION - GB:GENE ctpD GB:PRODUCT component of type IV pilus GB:PROTEIN_ID AAK86039.1 GB:DB_XREF GI:15155110 GB:GENE:GENE ctpD LENGTH 527 SQ:AASEQ MTGGLMTKRFKHHLRSSMAGGLAFCLTFSGVPGRHSPDFLRTSEAEAQSASIVRITESGTGIRKRLKLGLNKALVIDLPEDAHDILVADPSLADAVTRTSRRIYLFGKMVGQTNIFIFGDGGREIVSLDLEVERDISGLEANIRRFIPESDIKVEIVSDNIVLTGSVRTPQDSARAVQLADAFLKGGEATTRNISLTGGNNGGDAAIFAERRQVSQIVNMLTIEGEDQVTLKVTVAEVSRQVLKQLGFNGSISSSTSGNGFEFANPSNLGNAIDGASRIASGAIGSGSLRFASYLNAMEQAGVMRTLAEPSLTAISGEQAKFYVGGDFRLAAEQEVDIDKETGRPTITRTTNTVDYGITLNFKPVVLSPGRISLKIETNVSEPTYEGNVVTGNGGRTIPGSTYMSVRKRETSTTVELPSGGSIVIAGLVQDNVRQAMSGLPGMSKIPIFGTLFRSKEFLRNETELVIIATPYLVRPVARNQIARPDDNFNPENDAAMYFMNRVNKVYGRKDQVQAAPYQGSVGFIYK GT:EXON 1|1-527:0| BL:SWS:NREP 1 BL:SWS:REP 62->491|Y4XJ_RHISN|5e-46|36.0|386/423| PROS 420->453|PS00875|T2SP_D|PDOC00683| SEG 247->261|gfngsissstsgngf| SEG 272->288|aidgasriasgaigsgs| SEG 342->353|tgrptitrttnt| RP:PDB:NREP 1 RP:PDB:REP 294->420|3e0rD|1e-08|16.1|112/230| RP:PFM:NREP 1 RP:PFM:REP 298->474|PF00263|6e-19|35.4|164/166|Secretin| HM:PFM:NREP 2 HM:PFM:REP 297->475|PF00263|2.5e-45|36.0|164/166|Secretin| HM:PFM:REP 139->187|PF04972|1.1e-10|26.5|49/64|BON| GO:PFM:NREP 1 GO:PFM GO:0009306|"GO:protein secretion"|PF00263|IPR004846| RP:SCP:NREP 1 RP:SCP:REP 367->503|2nvpA1|5e-14|17.3|127/426|a.102.1.8| OP:NHOMO 512 OP:NHOMOORG 289 OP:PATTERN -------------------------------------------------------------------- 3-3---------------------------------------------------------------------------------11---------------------------------------11----121------------------1----1------1------------------1--1111----------------------------------------------------------------------------------------------------------------------------------------------------------------------------2----------1-32112-----2244511112111----------1-113123112521211121512222--12111-1111111--------211--1-------------------------------11222-321134333342344322445555344333234--3364-212112223-113423-1-------2133211--211-1-2-111-41311-12122221-3111111111111-----------2111112-1111221111111-1211121121222---11-----------1-1----------------------------------11-------------------1---------1-1-111-1111--11---------11-11111-111-------1-----11---2-32323232-1113-231---------12224-----1244433222221111111------------------1----------------------------1---11111--- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 112 STR:RPRED 21.3 SQ:SECSTR #####################################################################################################################################################################################################################################################################################################EEEEcTTccEEEEEccccGGGcEcccccccccccEEEEEEEEcTTccccccH########HHHTTTEEEEEcccTTccccEEEEEEEccccHHHHHHHTT#######TccccccTTccEEEEEcTTc########################################################################################################### DISOP:02AL 1-2, 6-7, 48-67, 172-194, 504-515| PSIPRED ccccEEccEEcccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHccccccHHHHccccccccEEEcccccEEEEEccccccEEEEccHHHEEEEEEcccEEEEEEccccEEEEEEEEcccccEEEEEEEEEccHHHHHHHHHHHccccccEEEEEccEEEEEEEEccHHHHHHHHHHHHHHHcccccccccEEEEEEccccEEEEEEcHHHHHHHHHHHcccccccEEEEEEEEEEEcccHHHccEEEEEEcccccccEEEccccccccccccccccEEEEEEcccccEEEEEEEHHHcccEEEEEccEEEEEccEEEEEEEccEEEEEEEEEEEEccccccccEEEEEEEEEEEEEEEEEEEEccccEEEEEEEEEEEcccccccEEEccccccccccEEEEEEEEEEEEEEEEccccEEEEEEEEEEccccccccccEEEcccEEEEEcccccccccEEEEEEEEEEEEEcccccccccccccccccccHHHHHHHHccccccccccccccccEEccEEEEEc //