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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : ctpE
DDBJ      :ctpE         components of type IV pilus
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  40/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
:193 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   1->184 PF09476 * Pilus_CpaD 4e-39 51.4 %
:HMM:PFM   2->186 PF09476 * Pilus_CpaD 2.8e-67 47.3 184/203  
:BLT:SWISS 3->86 RPOC2_TRIEI 5e-04 28.6 %
:BLT:SWISS 65->187 Y4XK_RHISN 4e-08 33.3 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86038.2 GT:GENE ctpE GT:PRODUCT components of type IV pilus GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(225744..226325) GB:FROM 225744 GB:TO 226325 GB:DIRECTION - GB:GENE ctpE GB:PRODUCT components of type IV pilus GB:PROTEIN_ID AAK86038.2 GB:DB_XREF GI:159139546 GB:GENE:GENE ctpE LENGTH 193 SQ:AASEQ MTTNAIPDDYRTRHPITLSEAEHSLDIPVSAGDSRLTTAMADNVRGFAQNYASMSTGIVNIQMPSGSPNSATAARMAKQIRSTLSGAGVAQGKIMETRYAASPNGDSAPIRLSYVAVTAMTGQCGQWPEDLSDNTFANKNWYNFGCASQSNLAAQIANPMDLVGPRGMSPIDAERRAVVIDTYRSGTATAPTN GT:EXON 1|1-193:0| BL:SWS:NREP 2 BL:SWS:REP 3->86|RPOC2_TRIEI|5e-04|28.6|84/1415| BL:SWS:REP 65->187|Y4XK_RHISN|4e-08|33.3|108/188| RP:PFM:NREP 1 RP:PFM:REP 1->184|PF09476|4e-39|51.4|183/202|Pilus_CpaD| HM:PFM:NREP 1 HM:PFM:REP 2->186|PF09476|2.8e-67|47.3|184/203|Pilus_CpaD| OP:NHOMO 43 OP:NHOMOORG 40 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------22211111111----------1-111111111111111111111111--111-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-1,186-194| PSIPRED cccccccccccccccEEEccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHHHHHHcccccccEEEcccccccccccccEEEEEEEEEEEcccccccHHHcccHHHcccccccccHHHHHHHHHHHccHHHHHcccccccccHHHHccHHHHHcccccccccc //