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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : ctpF
DDBJ      :ctpF         components of type IV pilus
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  121/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:427 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   165->395 3ea0A PDBj 2e-10 22.5 %
:RPS:PDB   164->403 3ea0A PDBj 8e-21 21.6 %
:RPS:SCOP  167->408 1cp2A  c.37.1.10 * 7e-15 14.2 %
:HMM:SCOP  163->413 1ionA_ c.37.1.10 * 1.5e-37 26.0 %
:RPS:PFM   168->341 PF01656 * CbiA 6e-04 31.8 %
:HMM:PFM   167->359 PF01656 * CbiA 6.5e-10 24.0 154/194  
:HMM:PFM   69->149 PF00072 * Response_reg 1.1e-06 20.3 79/112  
:BLT:SWISS 165->320 PARA_CHLMU 8e-05 23.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86037.2 GT:GENE ctpF GT:PRODUCT components of type IV pilus GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(224426..225709) GB:FROM 224426 GB:TO 225709 GB:DIRECTION - GB:GENE ctpF GB:PRODUCT components of type IV pilus GB:PROTEIN_ID AAK86037.2 GB:DB_XREF GI:159139545 GB:GENE:GENE ctpF LENGTH 427 SQ:AASEQ MSAVEYDIKLSGGAEAEPPLRASDMDRLRPLPRISIHAFCVSDTMQAVMEALSSDRRLSRVTLRVTKGDINAAATMFSASPTPNLIILETASATASLLNDLAPLAEVCDPSTRVIIIGRHNDITLYRDLIRNGISEYLVAPVNMADLLGSIAAIFVDPEAEPLGRNIAFIGAKGGVGSSTIAHNCAFGISSLFSTETILADMDLAYGTANIDFDQDPAQGMAEAVFSPERLDEVFLDRLLTKCSDHLSLLAAPSLLDRTYDLDRQAFLPILEVLQRSAPVAVLDLPHQWCDWTRAVLAEADEVVITAVPDLANLRNTKNLFDALIKLRPNDKLPHLVLNQVGMPKRPEITPADFLEPLEIEPIAIIPFDAQLFGNAANSGRMISEMDEKSQTAETFSQIAHTITGRSVLRKNRRGGLEKLKNILKRK GT:EXON 1|1-427:0| BL:SWS:NREP 1 BL:SWS:REP 165->320|PARA_CHLMU|8e-05|23.7|152/255| SEG 355->367|lepleiepiaiip| BL:PDB:NREP 1 BL:PDB:REP 165->395|3ea0A|2e-10|22.5|227/237| RP:PDB:NREP 1 RP:PDB:REP 164->403|3ea0A|8e-21|21.6|236/237| RP:PFM:NREP 1 RP:PFM:REP 168->341|PF01656|6e-04|31.8|154/178|CbiA| HM:PFM:NREP 2 HM:PFM:REP 167->359|PF01656|6.5e-10|24.0|154/194|CbiA| HM:PFM:REP 69->149|PF00072|1.1e-06|20.3|79/112|Response_reg| RP:SCP:NREP 1 RP:SCP:REP 167->408|1cp2A|7e-15|14.2|239/269|c.37.1.10| HM:SCP:REP 163->413|1ionA_|1.5e-37|26.0|242/0|c.37.1.10|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 145 OP:NHOMOORG 122 OP:PATTERN -------------------------------------------------------------------- 1-1-------------------------------------------------1-1-------1---------------------------------------------------------------1-----11--11221---1-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--1-----------11111------132311111111----------1-111112112211111111211122--121---1-11-11--------111--1--------------------------------1211------111-12--111----22221211-1112---1--------1-1------1------------1-------11-1-1-----1-1----11-1----11----------------------------------------------------1--1------------------------------------------------------11----------------------------------------------------------------------------------------------------------------1-112-------111------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 363 STR:RPRED 85.0 SQ:SECSTR ###############################################################cccTTcccHHHHHHHHHHccccccccccccccccTTHHHHTHHHHHHHHHHHTTTccTTcccccccTTcGGGccccccccTTTEEEEEEEEEEccTTccccEEEEEEEccTTccHHHHHHHHHHHHTTcTTccEEEEEccTTTccGGGTccccccccHHHHHHTGGGccHHHHHHcEEEEETTEEEEcccccHHHHHHccHHHHHHHHHHHHHHccEEEEEEEccccTTHHHHGGGccEEEEEEcccHHHHHHHHHHHHHHHTcccccccEEEEEEcTTTTccTTccHHHHHHHHTccEEEEEcccHHHHHHHHHHTccHHHHcTTcHHHHHHHHHHHccHHcccccccccccHHHHHHHHHH# DISOP:02AL 1-2,13-24,155-161,406-418| PSIPRED cccEEEEEEcccccccccccccccHHHccccccccEEEEEccHHHHHHHHHHcccccccccccccccccHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHcccHHHccccccHHHHHHHHHHHHHHHccccccEEEEEEcccccccHHHHHHHHHHHHHHHccccEEEEEcccccccHHHHccccccccHHHHHHccccccHHHHHHHHHcccccEEEEEccccHHHHccccHHHHHHHHHHHHHcccEEEEEccccccHHHHHHHHHccEEEEEEcccHHHHHHHHHHHHHHHHcccccccEEEEEEcccccccccccHHHHHHHHcccEEEEEcccHHHHHHHHHccccEEEEccccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHccc //