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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : ctpH
DDBJ      :ctpH         components of type IV pilus
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  193/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
:334 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   152->268 3c1qA PDBj 1e-14 14.5 %
:RPS:PFM   166->291 PF00482 * GSPII_F 2e-07 28.2 %
:HMM:PFM   167->291 PF00482 * GSPII_F 6e-20 25.0 120/124  
:HMM:PFM   6->92 PF04375 * HemX 3.7e-06 24.1 83/372  
:HMM:PFM   107->157 PF01040 * UbiA 0.001 28.6 49/258  
:BLT:SWISS 130->290 Y779_METJA 2e-06 23.7 %
:TM
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86035.1 GT:GENE ctpH GT:PRODUCT components of type IV pilus GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(221898..222902) GB:FROM 221898 GB:TO 222902 GB:DIRECTION - GB:GENE ctpH GB:PRODUCT components of type IV pilus GB:PROTEIN_ID AAK86035.1 GB:DB_XREF GI:15155106 GB:GENE:GENE ctpH LENGTH 334 SQ:AASEQ MDPTIVLLAVLVAISAGALAYAFLFQQIEVEKKTTSRFKRVQAAETDHTNIKAARDRVQELSKRRKSMQDSLRDMEKKQNEKAKKAKNVSLRDKLVQAGLTISVRQFHLLSAGAAACAAFISLIYGLSLLTALPIAVVAALGLPRWVLAFLLKRRQKKFLEEFPNALDVMCRSIKSGLPLNDAVRLIASDGQEPVKTEFQRVVDAQQVGIGIPQGIERMMLTMPLFEVSFFSIVINIQAQAGGNLSEALSNLSRVLRDRRKMRAKVNALSMEAKASAVIIGALPFIVMLLVHFTSPDYLSILFTDTRGHLILGASAIWMLIGIFIMRQMINFDI GT:EXON 1|1-334:0| BL:SWS:NREP 1 BL:SWS:REP 130->290|Y779_METJA|2e-06|23.7|156/299| COIL:NAA 36 COIL:NSEG 1 COIL:REGION 47->82| TM:NTM 5 TM:REGION 5->27| TM:REGION 120->142| TM:REGION 220->242| TM:REGION 276->298| TM:REGION 309->331| SEG 76->88|ekkqnekakkakn| SEG 112->119|agaaacaa| RP:PDB:NREP 1 RP:PDB:REP 152->268|3c1qA|1e-14|14.5|110/111| RP:PFM:NREP 1 RP:PFM:REP 166->291|PF00482|2e-07|28.2|117/124|GSPII_F| HM:PFM:NREP 3 HM:PFM:REP 167->291|PF00482|6e-20|25.0|120/124|GSPII_F| HM:PFM:REP 6->92|PF04375|3.7e-06|24.1|83/372|HemX| HM:PFM:REP 107->157|PF01040|0.001|28.6|49/258|UbiA| OP:NHOMO 261 OP:NHOMOORG 194 OP:PATTERN -------------------------------------------------------------------- 1-3-------------------------------------------------132-------1-------1---------3--------------------------------------------11----121--11132---11--------------------------------------------1----------------------------------------1----------------------------------------------------------------------------------------------------------1-------------------111--------------21112------121211111111----------1-111112112321111131322322--12111-1111111--------111--1--------------------------------1212--21113222221-11111222222123211121--111----1--1121-1--11------------11--1---11-1-1-111-2-1----1111111-11---------------------------1----------1------1----1-11-12----1-----------1------------------------------------11----------------------------------------------------------1111-111-------1------------11111111----1-211---------11222-----22333------------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 115 STR:RPRED 34.4 SQ:SECSTR #######################################################################################################################################################ccccccccHHHHHHHHHHHHHHHHTT#cHHHHHHHHHHTcccHHHHHHHHHHHHHHTTccHHHHHTTcTTTcc######HHHHHHHHHHHHTcHHHHHHHHHHHHHHHHHHHHHHTTHHHHH############################################################# DISOP:02AL 28-92, 262-272| PSIPRED ccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHccc //