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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : dapA.3
DDBJ      :dapA         dihydrodipicolinate synthase
Swiss-Prot:             

Homologs  Archaea  49/68 : Bacteria  740/915 : Eukaryota  61/199 : Viruses  0/175   --->[See Alignment]
c.1.10
:294 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->290 3b4uB PDBj e-163 100.0 %
:RPS:PDB   3->290 3b4uB PDBj 1e-65 100.0 %
:RPS:SCOP  6->290 1fdyA  c.1.10.1 * 1e-47 21.5 %
:HMM:SCOP  1->288 1f74A_ c.1.10.1 * 5.7e-55 31.4 %
:RPS:PFM   6->284 PF00701 * DHDPS 3e-30 38.9 %
:HMM:PFM   6->286 PF00701 * DHDPS 1.4e-37 30.0 273/289  
:BLT:SWISS 6->285 DAPA_STACT 1e-24 29.3 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88234.1 GT:GENE dapA.3 GT:PRODUCT dihydrodipicolinate synthase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2471384..2472268 GB:FROM 2471384 GB:TO 2472268 GB:DIRECTION + GB:GENE dapA GB:PRODUCT dihydrodipicolinate synthase GB:PROTEIN_ID AAK88234.1 GB:DB_XREF GI:15157690 GB:GENE:GENE dapA LENGTH 294 SQ:AASEQ MTQKFGLSAALTTPFKTDGTVDIDAMIAHARRCLSNGCDSVTLFGTTGEGCSVGSRERQAILSSFIAAGIAPSRIVTGVLVDSIEDAADQSAEALNAGARNILLAPPSYFKNVSDDGLFAWFSAVFSKIGKDARDILVYNIPSVTMVTLSVELVGRLKAAFPGIVTGVKDSSGNWSHTERLLKEHGDLAILIGDERDLARGVRLGGQGAISGVANFLTQEVRAMAVDGKDDPRIVDLVVELLKFPVTPAVKVLVSHTTGETIWSDVRAPLVAISPEDRRQIEGAFDALFRRQAA GT:EXON 1|1-294:0| BL:SWS:NREP 1 BL:SWS:REP 6->285|DAPA_STACT|1e-24|29.3|270/294| BL:PDB:NREP 1 BL:PDB:REP 3->290|3b4uB|e-163|100.0|288/288| RP:PDB:NREP 1 RP:PDB:REP 3->290|3b4uB|1e-65|100.0|288/288| RP:PFM:NREP 1 RP:PFM:REP 6->284|PF00701|3e-30|38.9|265/288|DHDPS| HM:PFM:NREP 1 HM:PFM:REP 6->286|PF00701|1.4e-37|30.0|273/289|DHDPS| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF00701|IPR002220| GO:PFM GO:0016829|"GO:lyase activity"|PF00701|IPR002220| RP:SCP:NREP 1 RP:SCP:REP 6->290|1fdyA|1e-47|21.5|279/292|c.1.10.1| HM:SCP:REP 1->288|1f74A_|5.7e-55|31.4|280/0|c.1.10.1|1/1|Aldolase| OP:NHOMO 1244 OP:NHOMOORG 850 OP:PATTERN 11----2133333311-1-----12---211-11111111111111111111111-1-1122121--- 224-122122211112211-11111111111111111132---11311122--1---1--111-111221-11112112111311111122211111-111111211324111111111-----11111111111111111111-1--111111111-------111111-1--1111-1111---11111111--------1------422211---133121-11111121111111111111111211111---11---1-11--11-2-111111-------11111111111111-------------111111111112123-------2-2231111111-1--11311111111-11111111-11131111111111141312-4211-11111111113-11211A11211173314535464322-12-412121211111111111121121211-1111111--111111-11-11-----211-113211144434223332223133332341111121212211211113134-11121121111111111-1111---1111211111111111111111-12111111212211211111111111111111212-11-11--1111111111112111122---111111111141312314223443422-2242232222253223222111221123232323333323223322222221111111111111111-11111111111131311121211111111133323111211122121211133311111---------111111111112111112222222211111111111111----------1-------------------------111-112111111 ---------------1-1211112321-------------------11236575451-1111-12-------122---------------------------11----1-1----1-1-------1----------------------1----1-1-11---1111---1---211--------11---1-1123111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 291 STR:RPRED 99.0 SQ:SECSTR cTcccEEEEEccccccTTccccHHHHHHHHHHHHHTTccEEEEccTTTTGGGccTTHHHHHHHHHHHTTccGGGEEEEEccccHHHHHHHHHHHHHTTccEEEEccccccccccHHHHHHHHHHHHHHHcTTcccEEEEEcHHHHcccccHHHHHHHHHHcTTTEEEEEEccccHHHHHHHHHHHTTcEEEEccHHHHHHHHHTTccEEEEcGGGTcHHHHHHHHTTccccHHHHHHHHHGGGccHHHHHHHHHHHHHccGGGGcccTTcccccHHHHHHHHHHHHHHHcH### DISOP:02AL 292-294| PSIPRED ccccEEEEEEccccccccccccHHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHHHHHccccEEEEEEcccccHHHHHHHHHHHHHccccEEEEEcccccccccHHHHHHHHHHHHHHcccccccEEEEEccccccccccHHHHHHHHHHcccEEEEEEEccccHHHHHHHHHHcccEEEEEccHHHHHHHHHHcccEEEEEHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHccccHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHccc //