[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : dapB
DDBJ      :dapB         dihydrodipicolinate reductase
Swiss-Prot:DAPB_AGRT5   RecName: Full=Dihydrodipicolinate reductase;         Short=DHPR;         EC=1.3.1.26;

Homologs  Archaea  29/68 : Bacteria  699/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
c.2.1d.81.1
:275 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   6->272 3ijpB PDBj 7e-69 49.6 %
:RPS:PDB   6->273 1arzB PDBj 3e-15 39.3 %
:RPS:SCOP  1->124 1cqiA1  c.2.1.8 * 1e-05 17.0 %
:RPS:SCOP  131->241 1arzA2  d.81.1.3 * 3e-27 43.6 %
:HMM:SCOP  2->274 1dihA1 c.2.1.3 * 7.6e-45 39.9 %
:RPS:PFM   6->128 PF01113 * DapB_N 8e-15 38.5 %
:RPS:PFM   132->269 PF05173 * DapB_C 1e-20 45.9 %
:HMM:PFM   132->269 PF05173 * DapB_C 2.6e-47 52.7 131/132  
:HMM:PFM   6->129 PF01113 * DapB_N 2.2e-36 35.5 124/124  
:BLT:SWISS 1->275 DAPB_AGRT5 e-139 100.0 %
:PROS 155->172|PS01298|DAPB
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86003.2 GT:GENE dapB GT:PRODUCT dihydrodipicolinate reductase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(185768..186595) GB:FROM 185768 GB:TO 186595 GB:DIRECTION - GB:GENE dapB GB:PRODUCT dihydrodipicolinate reductase GB:PROTEIN_ID AAK86003.2 GB:DB_XREF GI:159139530 GB:GENE:GENE dapB LENGTH 275 SQ:AASEQ MGSSGMKLVVVGAAGRMGQALIRLIHQTPGVQLHAAVAREGSAFVGRDAGEIAGLGPIGIEITSDPLQAFLHAEGVIDFTSPATSITFAGLAAQARIVHVVGTTGCSPQDEEKFKAASRHARIVKSGNMSLGVNLLSVLTQQAAQALDAQNWDIEILEMHHKHKVDAPSGTALLLGEAAAAGRKVDLTAASVRVRDGHTGAREAGTIGFATLRGGSVIGEHSVIFAGEGERVELSHYAGDRSIFARGAITAAVWAFDKKPGFYSMLDVLGLSQAE GT:EXON 1|1-275:0| SW:ID DAPB_AGRT5 SW:DE RecName: Full=Dihydrodipicolinate reductase; Short=DHPR; EC=1.3.1.26; SW:GN Name=dapB; OrderedLocusNames=Atu0183; ORFNames=AGR_C_307; SW:KW Amino-acid biosynthesis; Complete proteome; Cytoplasm;Diaminopimelate biosynthesis; Lysine biosynthesis; NADP;Oxidoreductase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->275|DAPB_AGRT5|e-139|100.0|275/275| GO:SWS:NREP 6 GO:SWS GO:0008652|"GO:cellular amino acid biosynthetic process"|Amino-acid biosynthesis| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0019877|"GO:diaminopimelate biosynthetic process"|Diaminopimelate biosynthesis| GO:SWS GO:0009085|"GO:lysine biosynthetic process"|Lysine biosynthesis| GO:SWS GO:0016491|"GO:oxidoreductase activity"|Oxidoreductase| GO:SWS GO:0055114|"GO:oxidation reduction"|Oxidoreductase| PROS 155->172|PS01298|DAPB|PDOC01000| SEG 141->150|qqaaqaldaq| SEG 170->182|gtalllgeaaaag| BL:PDB:NREP 1 BL:PDB:REP 6->272|3ijpB|7e-69|49.6|266/267| RP:PDB:NREP 1 RP:PDB:REP 6->273|1arzB|3e-15|39.3|267/269| RP:PFM:NREP 2 RP:PFM:REP 6->128|PF01113|8e-15|38.5|122/123|DapB_N| RP:PFM:REP 132->269|PF05173|1e-20|45.9|135/136|DapB_C| HM:PFM:NREP 2 HM:PFM:REP 132->269|PF05173|2.6e-47|52.7|131/132|DapB_C| HM:PFM:REP 6->129|PF01113|2.2e-36|35.5|124/124|DapB_N| GO:PFM:NREP 6 GO:PFM GO:0008839|"GO:dihydrodipicolinate reductase activity"|PF01113|IPR000846| GO:PFM GO:0009089|"GO:lysine biosynthetic process via diaminopimelate"|PF01113|IPR000846| GO:PFM GO:0055114|"GO:oxidation reduction"|PF01113|IPR000846| GO:PFM GO:0008839|"GO:dihydrodipicolinate reductase activity"|PF05173|IPR000846| GO:PFM GO:0009089|"GO:lysine biosynthetic process via diaminopimelate"|PF05173|IPR000846| GO:PFM GO:0055114|"GO:oxidation reduction"|PF05173|IPR000846| RP:SCP:NREP 2 RP:SCP:REP 1->124|1cqiA1|1e-05|17.0|112/121|c.2.1.8| RP:SCP:REP 131->241|1arzA2|3e-27|43.6|110/110|d.81.1.3| HM:SCP:REP 2->274|1dihA1|7.6e-45|39.9|163/163|c.2.1.3|1/1|NAD(P)-binding Rossmann-fold domains| OP:NHOMO 764 OP:NHOMOORG 735 OP:PATTERN -----------------------11--111111111111111112111111111-------------- -1-1-11-111-1-1-1-1-11---111111-1111---1---1---1---11-------11-1-1-1----------1-11111111111111------111-1---111---------1111-11-11111111-----111-111111111111-1-11-11111111---------11------111-111111111111111111111111111111111111111-111111111111111111111----11-1-1-1-111---1---111-------111-----11-----------------1--111---111112222222212122221111112--11111111111--111111--1-21111111111111111111111111111111111-1111111112111111221222111111111111111111111111111111-1111-11111--1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111---11111111111111111112111111111111111111111111111111111111121111111-1111111111111111111--1111111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111---------1111111111111111111111111111111111111111111111111---------1111111111111111111111-1111111111111111----------1--------------------------1-1111111111 -------------------------------------------------------------------------------------------------------------------------------------------------------------------2------3--1--------------1------111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 273 STR:RPRED 99.3 SQ:SECSTR cccccEEEEETTTTcHHHHHHHHHHHHcTTEEEEEEcccTTcTTccccHHHHcccccccccccccHHHHTTcccEEEEcccHHHHHHHHHHHHHTccEEEEccccccHHHHHHHHHHTTTcEEEccccccHHHHHHHHHHHHHHHHHHTTTcEEEEEEEEcTTccccccHHHHHHHHHHHHHTTccHHHHEEcccccccccccTTcEEEEEEEcTTccEEEEEEEEccccEEEEEEEEccTHHHHHHHHHHHHHHTTcccEEEcHHHHHcccc## DISOP:02AL 1-3,275-276| PSIPRED cccccEEEEEEccccHHHHHHHHHHHHccccEEEEEEEccccccccccHHHHccccccccEEcccHHHHHccccEEEEcccHHHHHHHHHHHHHccccEEEEcccccHHHHHHHHHHHccccEEEEccHHHHHHHHHHHHHHHHHHcccccccEEEEEEccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccccEEEEEEEccccccEEEEEEEccccEEEEEEEEcccHHHHHHHHHHHHHHHcccccEEcHHHHHcHHHcc //