[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : dapE
DDBJ      :dapE         succinyl-diaminopimelate desuccinylase
Swiss-Prot:DAPE_AGRT5   RecName: Full=Succinyl-diaminopimelate desuccinylase;         Short=SDAP desuccinylase;         EC=3.5.1.18;AltName: Full=N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase;

Homologs  Archaea  54/68 : Bacteria  654/915 : Eukaryota  68/199 : Viruses  0/175   --->[See Alignment]
c.56.5
:398 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   2->390 1vgyA PDBj 1e-72 42.4 %
:RPS:PDB   7->391 3dljA PDBj 1e-43 14.6 %
:RPS:SCOP  2->263 1vgyA1  c.56.5.4 * 2e-55 39.3 %
:RPS:SCOP  310->390 1vgyA1  c.56.5.4 * 2e-20 39.0 %
:HMM:SCOP  5->392 1lfwA1 c.56.5.4 * 1.1e-63 40.1 %
:RPS:PFM   69->378 PF01546 * Peptidase_M20 4e-18 35.1 %
:HMM:PFM   69->389 PF01546 * Peptidase_M20 6.1e-40 38.0 166/171  
:BLT:SWISS 1->398 DAPE_AGRT5 0.0 100.0 %
:PROS 68->77|PS00758|ARGE_DAPE_CPG2_1
:PROS 104->142|PS00759|ARGE_DAPE_CPG2_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86187.1 GT:GENE dapE GT:PRODUCT succinyl-diaminopimelate desuccinylase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(363738..364934) GB:FROM 363738 GB:TO 364934 GB:DIRECTION - GB:GENE dapE GB:PRODUCT succinyl-diaminopimelate desuccinylase GB:PROTEIN_ID AAK86187.1 GB:DB_XREF GI:15155282 GB:GENE:GENE dapE LENGTH 398 SQ:AASEQ MTTTDPVANLAALIRCPSVTPAEGGALSLLDTLLSPLGFAVERVMATEDGTPDVENLYARLGTEGPHLMFAGHTDVVPVGDEAAWSHPPFSADIAGGEMYGRGAVDMKGGIACFVAAIARHIGKHGKPQGSVSFLITGDEEGPSINGTSKLLEWAAAKGETWDACVVGEPTNPDQLGDMIKIGRRGSLSGRITVQGVQGHAAYPHLADNPIRGLLQLTHALMHPAFDHGTDDFQPSNLEVTTVDTGNAATNVIPARATAAFNIRFNDSWTAESLRAEIIRRLDAAANEGELRPDRAPVKYEIVWADRPSHVFLTRNNALISSLSGAIETVTGKEPKLSTTGGTSDARFIKDYCPVVEFGLVGQTMHMVDERVAVADLETLTRIYETFIERWFAHADGK GT:EXON 1|1-398:0| SW:ID DAPE_AGRT5 SW:DE RecName: Full=Succinyl-diaminopimelate desuccinylase; Short=SDAP desuccinylase; EC=3.5.1.18;AltName: Full=N-succinyl-LL-2,6-diaminoheptanedioate amidohydrolase; SW:GN Name=dapE; OrderedLocusNames=Atu0370; ORFNames=AGR_C_647; SW:KW Amino-acid biosynthesis; Cobalt; Complete proteome;Diaminopimelate biosynthesis; Hydrolase; Lysine biosynthesis;Metal-binding; Zinc. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->398|DAPE_AGRT5|0.0|100.0|398/398| GO:SWS:NREP 5 GO:SWS GO:0008652|"GO:cellular amino acid biosynthetic process"|Amino-acid biosynthesis| GO:SWS GO:0019877|"GO:diaminopimelate biosynthetic process"|Diaminopimelate biosynthesis| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0009085|"GO:lysine biosynthetic process"|Lysine biosynthesis| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| PROS 68->77|PS00758|ARGE_DAPE_CPG2_1|PDOC00613| PROS 104->142|PS00759|ARGE_DAPE_CPG2_2|PDOC00613| SEG 27->37|lslldtllspl| BL:PDB:NREP 1 BL:PDB:REP 2->390|1vgyA|1e-72|42.4|368/370| RP:PDB:NREP 1 RP:PDB:REP 7->391|3dljA|1e-43|14.6|384/471| RP:PFM:NREP 1 RP:PFM:REP 69->378|PF01546|4e-18|35.1|288/308|Peptidase_M20| HM:PFM:NREP 1 HM:PFM:REP 69->389|PF01546|6.1e-40|38.0|166/171|Peptidase_M20| GO:PFM:NREP 2 GO:PFM GO:0008152|"GO:metabolic process"|PF01546|IPR002933| GO:PFM GO:0016787|"GO:hydrolase activity"|PF01546|IPR002933| RP:SCP:NREP 2 RP:SCP:REP 2->263|1vgyA1|2e-55|39.3|247/262|c.56.5.4| RP:SCP:REP 310->390|1vgyA1|2e-20|39.0|81/262|c.56.5.4| HM:SCP:REP 5->392|1lfwA1|1.1e-63|40.1|242/0|c.56.5.4|1/1|Zn-dependent exopeptidases| OP:NHOMO 1334 OP:NHOMOORG 776 OP:PATTERN 222212-211111122121111121--1-13----11-11111111111----111133221112-12 122-123122211-12211-13332411111222222531-21-1-2311111-213-1111-22233452111111121--3--111---1---------1-111-121--------------1-----------34424---12----------------------------------------11--1--1222222221232223321111221--14-1-11111141-11111-11111111322331-4-22-3---1122321211-1--1111-------11111111111-------------1--------1-2--------------3------1----1---111-1---1------1--2--133311111113431114324211111111112-332335361331433211212331421-12243233343222222223221121111-11111--11111111111111111-122121135445333243222223334222222334444411554223223252651211111211111111111111-11-1112111111-1-1-------1--212-111111111111111111111111111322222222212111111211114112121-1-233221111111212112222222222-2222222222222222223352221111111111111111111222222222121111111111111131111123332124322221111111211111111122221233333335133333334---------12221222222222211111111111111111---------------1----------------------------21211-11112- ----211-421--121-3-2-11---1------2232111111---22-12435121-----211-------111--------------191-111------1----1-16--1-1----------------------------------------1-1---1-1-31--------1317111-----31------1-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 393 STR:RPRED 98.7 SQ:SECSTR #cccHHHHHHHHHHTcccccccccHHHHHHHHHHHHTTcEEEEEcccEEEcccEEcEEEEEcTTccEEEEEEEcccccccGGGTccccTTccEEETTEEEcTTTTTTHHHHHHHHHHHHHHHHTTcccccEEEEEEEccGGGTTTTHHHHHHHHTTTTcTTccEEEEcccccccccEEEEEEcEEEEEEEEEEcccccEETTcTTccccHHHHHHHHHTTcccTTcccccTTTTTTcccccHHHHHHHHETccccHHHHHHHHTccccccccHHHHHHHHHTccEEEHHHHHTTccccEEEEEEEEEEccEEccTTcHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHTEcccccTTccTTcTTcEEEHHHHHHHHHHHHHHHHHHTcc#### DISOP:02AL 396-398| PSIPRED ccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHcccEEEEEEEcccccccEEEEEEEEcccccEEEEEEccccccccccccccccccccEEcccEEEEccccccHHHHHHHHHHHHHHHHcccccccEEEEEEEcccccccHHHHHHHHHHHHHHcccccEEEEcccccccccccEEEEEEcEEEEEEEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEccccccEEEccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEccccccccccccHHHHHHHHHHHHHHHcccccEEEEcccHHHHHHHHHccEEEEEcccccccccccEEEHHHHHHHHHHHHHHHHHHHHccccc //