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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : dapF
DDBJ      :dapF         diaminopimelate epimerase
Swiss-Prot:DAPF_AGRT5   RecName: Full=Diaminopimelate epimerase;         Short=DAP epimerase;         EC=5.1.1.7;

Homologs  Archaea  19/68 : Bacteria  571/915 : Eukaryota  24/199 : Viruses  0/175   --->[See Alignment]
c.141.1d.21.1
:299 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->281 3ejxD PDBj 3e-34 39.5 %
:RPS:PDB   5->283 1bwzA PDBj 8e-42 27.4 %
:RPS:SCOP  1->148 1to6A  c.141.1.1 * 5e-22 7.8 %
:RPS:SCOP  157->283 1bwzA2  d.21.1.1 * 8e-32 30.3 %
:HMM:SCOP  5->131 1bwzA1 d.21.1.1 * 9.6e-34 39.4 %
:HMM:SCOP  137->284 1bwzA2 d.21.1.1 * 1.1e-40 41.3 %
:RPS:PFM   9->120 PF01678 * DAP_epimerase 2e-13 39.1 %
:HMM:PFM   7->123 PF01678 * DAP_epimerase 4.9e-19 29.6 115/121  
:HMM:PFM   159->275 PF01678 * DAP_epimerase 1.7e-22 25.9 112/121  
:BLT:SWISS 1->299 DAPF_AGRT5 e-162 100.0 %
:PROS 67->81|PS01326|DAP_EPIMERASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88415.1 GT:GENE dapF GT:PRODUCT diaminopimelate epimerase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2679613..2680512) GB:FROM 2679613 GB:TO 2680512 GB:DIRECTION - GB:GENE dapF GB:PRODUCT diaminopimelate epimerase GB:PROTEIN_ID AAK88415.1 GB:DB_XREF GI:15157908 GB:GENE:GENE dapF LENGTH 299 SQ:AASEQ MADTVEFAKMNGLANKILVVDMRGRKDMVTPAAAIALNSNPATQFDQIMAIHDPRVGGTDAFIDILNCDGTKAQACGNGTRCVVQALSSETGKTSFTFQTVAGILNAVEHEDGMISVDMGLPRFRWSDIPLSEEFHDTSRIELQIGPIDAPILHSPAVMSMGNPHAIFWVDRDPMTFDLERFGPLLENHPMFPEKANITLAQVISDSALRTRTWERGAGLTLACGSAACASAVSAARTGRTGRKVTIDVASSPVRVPLTIDWREDNHVVMTGPAEWEWSGSVDPVTGVWARDAVERGAV GT:EXON 1|1-299:0| SW:ID DAPF_AGRT5 SW:DE RecName: Full=Diaminopimelate epimerase; Short=DAP epimerase; EC=5.1.1.7; SW:GN Name=dapF; OrderedLocusNames=Atu2695; ORFNames=AGR_C_4886; SW:KW Amino-acid biosynthesis; Complete proteome; Cytoplasm; Isomerase;Lysine biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->299|DAPF_AGRT5|e-162|100.0|299/299| GO:SWS:NREP 4 GO:SWS GO:0008652|"GO:cellular amino acid biosynthetic process"|Amino-acid biosynthesis| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016853|"GO:isomerase activity"|Isomerase| GO:SWS GO:0009085|"GO:lysine biosynthetic process"|Lysine biosynthesis| PROS 67->81|PS01326|DAP_EPIMERASE|PDOC01029| SEG 217->236|gagltlacgsaacasavsaa| BL:PDB:NREP 1 BL:PDB:REP 5->281|3ejxD|3e-34|39.5|271/301| RP:PDB:NREP 1 RP:PDB:REP 5->283|1bwzA|8e-42|27.4|270/274| RP:PFM:NREP 1 RP:PFM:REP 9->120|PF01678|2e-13|39.1|110/120|DAP_epimerase| HM:PFM:NREP 2 HM:PFM:REP 7->123|PF01678|4.9e-19|29.6|115/121|DAP_epimerase| HM:PFM:REP 159->275|PF01678|1.7e-22|25.9|112/121|DAP_epimerase| GO:PFM:NREP 3 GO:PFM GO:0005737|"GO:cytoplasm"|PF01678|IPR001653| GO:PFM GO:0008837|"GO:diaminopimelate epimerase activity"|PF01678|IPR001653| GO:PFM GO:0009089|"GO:lysine biosynthetic process via diaminopimelate"|PF01678|IPR001653| RP:SCP:NREP 2 RP:SCP:REP 1->148|1to6A|5e-22|7.8|141/371|c.141.1.1| RP:SCP:REP 157->283|1bwzA2|8e-32|30.3|122/144|d.21.1.1| HM:SCP:REP 5->131|1bwzA1|9.6e-34|39.4|127/0|d.21.1.1|1/1|Diaminopimelate epimerase-like| HM:SCP:REP 137->284|1bwzA2|1.1e-40|41.3|143/0|d.21.1.1|1/1|Diaminopimelate epimerase-like| OP:NHOMO 640 OP:NHOMOORG 614 OP:PATTERN -----------------------1----1-1-111111111111-1111------------------- -1--------------------------------------------------------------------1-----------1--111111111------------------------1111111---------1------111--1111111111111111111112211111111111111-----111111111111111111111111111111111-1--1--11-11--------------------11--11-1-1-11--11-1---------------------------------------------------111-111111-1----1--1---1-1--1111111111-11111111----1-111111111111111111111111111111111-111111111111111112111111111111111111111111111111111111111-11111----11111111111111111111111111111222211111111111-1111211111111111111111111111111111111111111111111--111---1----1-111111111----1-11-------------------------111111111111111111111111111111111-111111-1---11111111111111111-1111111111111111111121111111111111111111111111111111-11111111111111111111111111111211111111111111111111111111111111212121211111---------11111111111111111111111111111111-111111-----------------------------------------------11 ----111--------------------------------------------1-------------------------------------------------------11-------------------------------------------------2----1----------2-111811111---2-1211----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 288 STR:RPRED 96.3 SQ:SECSTR cccEcEEEEEEETTEEEEEEETTcccccccHHHHHHHcTTTcccccEEEEEEccccTTccEEEEEEETTccccccTTTTHHHHHHHHHHTccccEEEEEccccEEEEEEcTTccEEEEcccccccGGGTTcccccccTTcccccEEEEETTEEEEEEEEEcccEEEEEEccccTTTccHHHHHHHHHTcTTcTTccEEEEEEEEETTEEEEEEEETTTEEccccHHHHHHHHHHHHHTTcccccEEEEccccEEEEEcccEETTTcccEEEEccEEEEEEEccTTTcc########### DISOP:02AL 1-2, 296-299| PSIPRED cccEEEEEEEEcccccEEEEcccccccccHHHHHHHHHccccccccEEEEEEcccccccEEEEEEEEcccccHHHcccHHHHHHHHHHHHHcccEEEEEEccEEEEEEEEcccEEEEEEccEEEcHHHccccccccccEEEEEEcccccccEEEEEEEEEccccEEEEEEcccHHHccHHHHHHHHHccccccccccEEEEEEccccEEEEEEEEEccccccccHHHHHHHHHHHHHHccccccEEEEEccccEEEEEEEEEccccEEEEEEcEEEEEEEEEEcccccHHHcccccccc //