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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : dctD.1
DDBJ      :dctD         two component response regulator
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  831/915 : Eukaryota  34/199 : Viruses  0/175   --->[See Alignment]
a.4.1b.1.18c.1.26c.23.1c.37.1
:448 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->380 3dzdA PDBj 5e-67 38.7 %
:RPS:PDB   1->56 2dvyD PDBj 7e-06 9.1 %
:RPS:PDB   51->383 1e32A PDBj 3e-56 12.9 %
:RPS:PDB   357->443 2auwB PDBj 1e-12 18.4 %
:RPS:SCOP  1->71 1cvrA1  b.1.18.12 * 3e-11 8.8 %
:RPS:SCOP  47->337 1lt7A  c.1.26.1 * 2e-47 12.3 %
:RPS:SCOP  357->441 1ntcA  a.4.1.12 * 4e-15 20.0 %
:HMM:SCOP  1->190 1s8nA_ c.23.1.1 * 5.2e-44 42.5 %
:HMM:SCOP  144->384 1ny5A2 c.37.1.20 * 3.9e-60 38.2 %
:HMM:SCOP  356->442 1ntcA_ a.4.1.12 * 4.2e-13 32.2 %
:RPS:PFM   6->116 PF00072 * Response_reg 2e-19 41.4 %
:RPS:PFM   145->311 PF00158 * Sigma54_activat 7e-51 55.7 %
:RPS:PFM   403->439 PF02954 * HTH_8 7e-04 51.4 %
:HMM:PFM   147->311 PF00158 * Sigma54_activat 3.1e-63 52.1 165/168  
:HMM:PFM   6->112 PF00072 * Response_reg 2.1e-28 43.0 107/112  
:HMM:PFM   399->439 PF02954 * HTH_8 2.4e-12 46.3 41/42  
:BLT:SWISS 6->443 DCTD_RHIME e-111 47.5 %
:PROS 358->367|PS00688|SIGMA54_INTERACT_3

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK85935.2 GT:GENE dctD.1 GT:PRODUCT two component response regulator GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 119383..120729 GB:FROM 119383 GB:TO 120729 GB:DIRECTION + GB:GENE dctD GB:PRODUCT two component response regulator GB:PROTEIN_ID AAK85935.2 GB:DB_XREF GI:159139499 GB:GENE:GENE dctD LENGTH 448 SQ:AASEQ MTMSRVLLIDDEEELRFSTAQALELSGFAVTMLASAEHALELIGYSFDGVVVSDIRMPGMDGMTLLQKVRELDPEIPVILMTGHGDVQLAVNAMRNGAYDFIEKPFTPQYLAGIIKRANDRRALVLENRRLKAVAGKHDDLETRLPGRTQVMVDLRYRIRAIGATDADTLIVGDTGAGKEVVARALHDISARANRPFVAINCAALPQTLIESELFGHEAGAFPGALRSRYGKFEHARGGTILLDEIGSMPFELQGRFLRVLQERVITRLGSNETVELDVRFIATSKVDLEQEVAAGRFRADLLYRLNVATLLVPSLSQRSADIPLLFLHLVREAAARYGREDMDVPQHLLSAVSLREWPGNVRELRNAADRFVLGLESDVSEVSLALDDDGTSTLAPRVAAYEKSLIAHAIAVHGGNLKSVYESLGISRKTLYEKMQKYGLHRHMTEV GT:EXON 1|1-448:0| BL:SWS:NREP 1 BL:SWS:REP 6->443|DCTD_RHIME|e-111|47.5|436/460| PROS 358->367|PS00688|SIGMA54_INTERACT_3|PDOC00579| BL:PDB:NREP 1 BL:PDB:REP 5->380|3dzdA|5e-67|38.7|362/366| RP:PDB:NREP 3 RP:PDB:REP 1->56|2dvyD|7e-06|9.1|55/214| RP:PDB:REP 51->383|1e32A|3e-56|12.9|319/438| RP:PDB:REP 357->443|2auwB|1e-12|18.4|87/151| RP:PFM:NREP 3 RP:PFM:REP 6->116|PF00072|2e-19|41.4|111/111|Response_reg| RP:PFM:REP 145->311|PF00158|7e-51|55.7|167/168|Sigma54_activat| RP:PFM:REP 403->439|PF02954|7e-04|51.4|37/42|HTH_8| HM:PFM:NREP 3 HM:PFM:REP 147->311|PF00158|3.1e-63|52.1|165/168|Sigma54_activat| HM:PFM:REP 6->112|PF00072|2.1e-28|43.0|107/112|Response_reg| HM:PFM:REP 399->439|PF02954|2.4e-12|46.3|41/42|HTH_8| GO:PFM:NREP 9 GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF00072|IPR001789| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF00072|IPR001789| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00072|IPR001789| GO:PFM GO:0005524|"GO:ATP binding"|PF00158|IPR002078| GO:PFM GO:0005622|"GO:intracellular"|PF00158|IPR002078| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00158|IPR002078| GO:PFM GO:0008134|"GO:transcription factor binding"|PF00158|IPR002078| GO:PFM GO:0003700|"GO:transcription factor activity"|PF02954|IPR002197| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02954|IPR002197| RP:SCP:NREP 3 RP:SCP:REP 1->71|1cvrA1|3e-11|8.8|68/82|b.1.18.12| RP:SCP:REP 47->337|1lt7A|2e-47|12.3|284/305|c.1.26.1| RP:SCP:REP 357->441|1ntcA|4e-15|20.0|85/91|a.4.1.12| HM:SCP:REP 1->190|1s8nA_|5.2e-44|42.5|181/190|c.23.1.1|1/1|CheY-like| HM:SCP:REP 144->384|1ny5A2|3.9e-60|38.2|241/247|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 356->442|1ntcA_|4.2e-13|32.2|87/0|a.4.1.12|1/1|Homeodomain-like| OP:NHOMO 10433 OP:NHOMOORG 887 OP:PATTERN ------------------------A2121715----------1JN-3S11-21-1-1111-------- CfZ2423122321233333-35113533333264443685113413232222524-43--4562734BA9211112222154474988FELJ2B551--54A579V6M9A11111111111111144397369996JHGGG323D1J9DA5545756445646A764GFI943244443443423223-11B67IIHIIGHHDJGJHGEFH99AAHIK9EHCB86556777cc23333332333333331112521--1--1-133----1-3111-1-333132321144433443343-1--1--11----211---11117RO8cJIIMKKMDKC6UDD9466HD611G7993qkKOIG9HF9FBF5252PLNBABB66556LEWRVDBBNQGGNCCACBCBBCCE-KKMGHJSP9IB2JKKHIIFMOKMJOMBC7BAFFCFG79B66666666D8854LDM11122122--111111111111111----37EHB68B98FYZZXaVOKKKKTTaaNONNFNUYVQWRQ33ILJRQFEDMOKVNCCDMJNDFGB2211111887RUaF**lTV*lK*krsy6yu*ukjvTeooot**Ty-33312222211211111117E323FEOGFGJGRDJDAMGIIHKLNNLIKNJLNJUQ--2IJCO------JADEBA7FEDGFEGHGF-EGEEHFFFEEEEGFFEFFEHIHCDCC7IFGGGIJJIJIGKGGIEBA9CBCB5-B889A9987ABA--18111114444E6YDP1113221111112236676659333YEZZaaVZecWZcaaQZYW1----1---ACIKOJJJKJNSNNMEEGDGDECCB443411O28855662222222252--------------------------25342474538M3 -1------------2------------------------------------------------11-1--1--1-1------111-1--------------1-11-1----------------------------------------------------5----1------3--31-1---1111-623C-522-3---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 447 STR:RPRED 99.8 SQ:SECSTR ccEcEEEEcccccTTTTTTccccHHTEEEEEccccccTTHHHHHHHccccTccccHHHHTHHHHHTTccEEEETTcEEEEEETTEEEEEEEEEEccccEEEEcTTcccccccccccccTTcccTTcccGGGcccccHHHHHHHHHHHHHHHcHHHHHHcccccccEEEEEccTTccccHHHHHHHHHHHGGHHTTcEEEEEcHHHHTTccTTHHHHHHHHHHTTcccHHHHHHHHTccEEEEEccGGGTccHHHHcccTTHHHHHHHHHHHHHTccccccEEEEEEEccGGGccGGGTcTTcccEEEEcccccHHHHHHHHHHTTTTccccTTcHHHHHHHcTTccHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHTcccccEEEccHHHHTTcccccccccccEEccccTTHHHEEccHHHHHHHHHHHHTTGcTTc# DISOP:02AL 1-1,124-144,381-398,440-449| PSIPRED ccccEEEEEcccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHccccEEEEEcccccccHHHHHHHHHHHcccccEEEEEccccHHHHHHHHHcccHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHccccccccccccccccHHHHccccEEEEEcHHHccHHHHHHHHHHHHcccEEEcccccEEEEEEEEEEcccccHHHHHHcccccHHHHHHHcEEEEEEcccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHccccccccc //