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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : def.1
DDBJ      :def          polypeptide deformylase
Swiss-Prot:DEF_AGRT5    RecName: Full=Peptide deformylase;         Short=PDF;         EC=3.5.1.88;AltName: Full=Polypeptide deformylase;

Homologs  Archaea  1/68 : Bacteria  891/915 : Eukaryota  65/199 : Viruses  0/175   --->[See Alignment]
d.167.1
:170 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->167 1n5nA PDBj 2e-43 49.1 %
:RPS:PDB   1->158 3cpmA PDBj 8e-62 38.0 %
:RPS:SCOP  2->169 1bs4A  d.167.1.1 * 1e-58 46.7 %
:HMM:SCOP  2->167 1y6hA_ d.167.1.1 * 1.1e-66 50.6 %
:RPS:PFM   5->154 PF01327 * Pep_deformylase 4e-41 56.7 %
:HMM:PFM   4->155 PF01327 * Pep_deformylase 2.4e-58 50.7 152/157  
:BLT:SWISS 1->170 DEF_AGRT5 7e-94 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86183.1 GT:GENE def.1 GT:PRODUCT polypeptide deformylase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 360846..361358 GB:FROM 360846 GB:TO 361358 GB:DIRECTION + GB:GENE def GB:PRODUCT polypeptide deformylase GB:PROTEIN_ID AAK86183.1 GB:DB_XREF GI:15155278 GB:GENE:GENE def LENGTH 170 SQ:AASEQ MTIKPLIILPDPVLRQQSKLIEQVDAEVLRLADDMLETMYDAPGIGLAAIQIGVPRRMLVIDVAREGEEKTPVVFINPEILKVSDDISTYEEGCLSIPDYYAEVERPASLTVQYVGRDGKQQTVEADGLLATCLQHEIDHLNGVLFIDHISRLKRDMVIKKFTKAARAKI GT:EXON 1|1-170:0| SW:ID DEF_AGRT5 SW:DE RecName: Full=Peptide deformylase; Short=PDF; EC=3.5.1.88;AltName: Full=Polypeptide deformylase; SW:GN Name=def; OrderedLocusNames=Atu0366; ORFNames=AGR_C_640; SW:KW Complete proteome; Hydrolase; Iron; Metal-binding;Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->170|DEF_AGRT5|7e-94|100.0|170/170| GO:SWS:NREP 3 GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| BL:PDB:NREP 1 BL:PDB:REP 1->167|1n5nA|2e-43|49.1|165/167| RP:PDB:NREP 1 RP:PDB:REP 1->158|3cpmA|8e-62|38.0|158/184| RP:PFM:NREP 1 RP:PFM:REP 5->154|PF01327|4e-41|56.7|150/155|Pep_deformylase| HM:PFM:NREP 1 HM:PFM:REP 4->155|PF01327|2.4e-58|50.7|152/157|Pep_deformylase| GO:PFM:NREP 3 GO:PFM GO:0005506|"GO:iron ion binding"|PF01327|IPR000181| GO:PFM GO:0006412|"GO:translation"|PF01327|IPR000181| GO:PFM GO:0042586|"GO:peptide deformylase activity"|PF01327|IPR000181| RP:SCP:NREP 1 RP:SCP:REP 2->169|1bs4A|1e-58|46.7|165/168|d.167.1.1| HM:SCP:REP 2->167|1y6hA_|1.1e-66|50.6|166/0|d.167.1.1|1/1|Peptide deformylase| OP:NHOMO 1476 OP:NHOMOORG 957 OP:PATTERN ---------------------------------------------2---------------------- 1211322222222211111-111111111111111132211331222132223332231144212233422122222211111122221111-11111111111121111111111111111112111111111111111111121222222222111111211112222212111112111111111111122222222222222222112222222222312211111131222222222222222222121122112122111221121211111122221112--111111111111111111111111211111111111322444443324122442332111111111111121111111111111111111111111212111111111122222221222-22222222112122222222222222111233333323322222222222221222232222211113233133331331111111111122222232232222222222222222222222212222222222222223322222121111111222222111111111111111222222222111133111111111111111111111121112222111112121223333322333323223221-1112111111111111111111111121-1111111111111111111112112121111111111111111111111111111111111111111111111-2333211111111111111111112222212111112222222212222122222212222211112222221212211222222221111112111111111-1111111-------11--111---111111---1111111111112 11--11--1---111--------------------------------------------------------------------------------------------141211111-----1111--1-131--11------1211------11---12------1-2118--221322A222114313-321221113 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 170 STR:RPRED 100.0 SQ:SECSTR ccccccccTTcGGGTccccccccccHHHHHHHHHHHHHHHHTTccEEEGGGGTccccEEEEcccccTTccccEEEEEEEEEEEcccEEEEEEccTTcTTccEEEEEEccEEEEEEcTTccEEEEEEcHHHHHHHHHHHHHHTTccGGGGccHHHHHTTHHHHHHHHHHHH DISOP:02AL 168-170| PSIPRED cccHHHHHcccHHHcccccccccccHHHHHHHHHHHHHHHHccccEEEEccccccEEEEEEEccccccccccEEEEccEEEEccccEEEEccccEEcccEEEEEccccEEEEEEEcccccEEEEEEcccEEEEEEEEEHHcccEEEEEEccHHHHHHHHHHHHHHHHHcc //