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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : def.2
DDBJ      :def          polypeptide deformylase
Swiss-Prot:DEFL_AGRT5   RecName: Full=Peptide deformylase-like;AltName: Full=Polypeptide deformylase-like;

Homologs  Archaea  1/68 : Bacteria  763/915 : Eukaryota  29/199 : Viruses  0/175   --->[See Alignment]
d.167.1
:164 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   1->139 1n5nA PDBj 4e-26 40.3 %
:RPS:PDB   1->142 3cpmA PDBj 2e-45 29.6 %
:RPS:SCOP  2->142 1bs4A  d.167.1.1 * 2e-43 32.1 %
:HMM:SCOP  2->166 1y6hA_ d.167.1.1 * 6.1e-54 44.2 %
:RPS:PFM   3->142 PF01327 * Pep_deformylase 2e-31 49.3 %
:HMM:PFM   3->151 PF01327 * Pep_deformylase 1.5e-44 41.6 149/157  
:BLT:SWISS 1->164 DEFL_AGRT5 3e-84 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87337.1 GT:GENE def.2 GT:PRODUCT polypeptide deformylase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1541091..1541585 GB:FROM 1541091 GB:TO 1541585 GB:DIRECTION + GB:GENE def GB:PRODUCT polypeptide deformylase GB:PROTEIN_ID AAK87337.1 GB:DB_XREF GI:15156637 GB:GENE:GENE def LENGTH 164 SQ:AASEQ MAIRPILPYPHAGLSGICAPVTVFDDHLRELVTDLIDTMRAAPGVGITAAHIGVLQRVFVLELTPGTILTYINPEITSHSPQTMRHVEGSVSMPGFTDEVERPSTVEVRFQDITGAEQTETAEGFHAICIQHEIDQLDGIFWLKRLSRLKRDRLVKKWEKSRNP GT:EXON 1|1-164:0| SW:ID DEFL_AGRT5 SW:DE RecName: Full=Peptide deformylase-like;AltName: Full=Polypeptide deformylase-like; SW:GN OrderedLocusNames=Atu1550; ORFNames=AGR_C_2856; SW:KW Complete proteome. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->164|DEFL_AGRT5|3e-84|100.0|164/164| SEG 143->157|lkrlsrlkrdrlvkk| BL:PDB:NREP 1 BL:PDB:REP 1->139|1n5nA|4e-26|40.3|139/167| RP:PDB:NREP 1 RP:PDB:REP 1->142|3cpmA|2e-45|29.6|142/184| RP:PFM:NREP 1 RP:PFM:REP 3->142|PF01327|2e-31|49.3|140/155|Pep_deformylase| HM:PFM:NREP 1 HM:PFM:REP 3->151|PF01327|1.5e-44|41.6|149/157|Pep_deformylase| GO:PFM:NREP 3 GO:PFM GO:0005506|"GO:iron ion binding"|PF01327|IPR000181| GO:PFM GO:0006412|"GO:translation"|PF01327|IPR000181| GO:PFM GO:0042586|"GO:peptide deformylase activity"|PF01327|IPR000181| RP:SCP:NREP 1 RP:SCP:REP 2->142|1bs4A|2e-43|32.1|140/168|d.167.1.1| HM:SCP:REP 2->166|1y6hA_|6.1e-54|44.2|165/0|d.167.1.1|1/1|Peptide deformylase| OP:NHOMO 1122 OP:NHOMOORG 793 OP:PATTERN ---------------------------------------------2---------------------- 12113222222122--1-----11------------222111112--122223322221122211233421-11111111221112221111-1111-111111121111111111111111112111111111111111111121222222212111111211111222212111112111111-11111111111111111111111--11111111112-11------31111111111111111-11-1-----------------1----------------------------------------------------11222333332223121222222111111111111121111111111111-11111111111212111111111122222221222-22222222112122222222222222111233333323311111111211221222222222211112222122221111111111111122222222222222222222222222222222212222122221222213322222121111111222222111111111111111222222222111133-11111111111111111111111111222111112121222232322333323223211-11121-1111111111111111111121-111111111111111111111211212111111111111111111111111111111111111111111-----121121111111111111111111222221211111122222221222212221----1---11111222221212211111111111111112111111111-1111111---------------------------1111111111-1 11------1---------------------------------------------------------------------------------------------------2-------------------------------------------------1------1-1-------11119121114113-31-121113 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 162 STR:RPRED 98.8 SQ:SECSTR ccccccccTTcGGGTccccccccccHHHHHHHHHHHHHHHHTTccEEEGGGGTccccEEEEcccccccEEEEEEEEEEEcccEEEEEEccTTcTTccEEEEEEccEEEEEEcTTccEEEEEEcHHHHHHHHHHHHHHTTccGGGGccHHHHHHHHHHHHHHH## DISOP:02AL 161-164| PSIPRED ccccHHHHcccHHHcccccccccccHHHHHHHHHHHHHHHHccccEEEEcccccEEEEEEEEcccccEEEEEccEEEEccccEEEcccccEEccccEEEEccccEEEEEEEcccccEEEEEEcccEEEEEEEEHHHcccEEEEEEccHHHHHHHHHHHHHHccc //