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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : deoC.1
DDBJ      :deoC         2-deoxyribose-5-phosphate aldolase
Swiss-Prot:DEOC_AGRT5   RecName: Full=Deoxyribose-phosphate aldolase;         EC=4.1.2.4;AltName: Full=Phosphodeoxyriboaldolase;         Short=Deoxyriboaldolase;         Short=DERA;

Homologs  Archaea  9/68 : Bacteria  498/915 : Eukaryota  100/199 : Viruses  0/175   --->[See Alignment]
c.1.10
:257 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   29->233 1p1xB PDBj 4e-57 56.1 %
:RPS:PDB   24->215 2a4aB PDBj 8e-12 34.9 %
:RPS:SCOP  25->226 1n7kA  c.1.10.1 * 6e-38 22.3 %
:HMM:SCOP  3->246 2a4aA1 c.1.10.1 * 2.6e-71 45.1 %
:RPS:PFM   25->209 PF01791 * DeoC 5e-26 47.2 %
:HMM:PFM   15->219 PF01791 * DeoC 3.3e-49 36.7 199/236  
:BLT:SWISS 1->257 DEOC_AGRT5 e-127 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK85953.2 GT:GENE deoC.1 GT:PRODUCT 2-deoxyribose-5-phosphate aldolase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 135859..136632 GB:FROM 135859 GB:TO 136632 GB:DIRECTION + GB:GENE deoC GB:PRODUCT 2-deoxyribose-5-phosphate aldolase GB:PROTEIN_ID AAK85953.2 GB:DB_XREF GI:159139507 GB:GENE:GENE deoC LENGTH 257 SQ:AASEQ MELQRPREAAALTLSLLDLTNLREDCTPQQIATLCQRAHTEFGNTAAICIWPRFVAQARAAFGKDHTIRIATVVNFPSGDLDVATVVAETEAAIGDGADEIDLVIPYRKFMAGDESAVAEMIAAVRKACAAPVLLKVILETGELKDKALIRRASEIAIAEGADFIKTSTGKVAVNATLEAADIMLQAIRDSKKKVGFKPAGGIGTVEDATLYLRLAETIMAPNWAMPSTFRFGASGVLDDVLNVLAGGEPAKAASGY GT:EXON 1|1-257:0| SW:ID DEOC_AGRT5 SW:DE RecName: Full=Deoxyribose-phosphate aldolase; EC=4.1.2.4;AltName: Full=Phosphodeoxyriboaldolase; Short=Deoxyriboaldolase; Short=DERA; SW:GN Name=deoC; OrderedLocusNames=Atu0132; ORFNames=AGR_C_211; SW:KW Complete proteome; Cytoplasm; Lyase; Schiff base. SW:EXACT F SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->257|DEOC_AGRT5|e-127|100.0|257/259| GO:SWS:NREP 2 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016829|"GO:lyase activity"|Lyase| SEG 9->22|aaaltlslldltnl| SEG 83->93|vatvvaeteaa| BL:PDB:NREP 1 BL:PDB:REP 29->233|1p1xB|4e-57|56.1|205/251| RP:PDB:NREP 1 RP:PDB:REP 24->215|2a4aB|8e-12|34.9|192/247| RP:PFM:NREP 1 RP:PFM:REP 25->209|PF01791|5e-26|47.2|180/215|DeoC| HM:PFM:NREP 1 HM:PFM:REP 15->219|PF01791|3.3e-49|36.7|199/236|DeoC| GO:PFM:NREP 1 GO:PFM GO:0016829|"GO:lyase activity"|PF01791|IPR002915| RP:SCP:NREP 1 RP:SCP:REP 25->226|1n7kA|6e-38|22.3|193/234|c.1.10.1| HM:SCP:REP 3->246|2a4aA1|2.6e-71|45.1|244/0|c.1.10.1|1/1|Aldolase| OP:NHOMO 661 OP:NHOMOORG 607 OP:PATTERN --1-1-----------1-------------1---1----------------------1111------- 111-1111111111--------1112-----11---1111-111-1111-1-111111--1112-11111--------1---11---111211111---11--2-1--1-------------------------1-11122---1-11111111-11-------11-1111------------111--1-1111111111111111111112211111111-21111111111111222222111121111111-1-11-1----111111-----1111111111111111111111111111111111111111---111111112111111111111111111112211111111111-111-1111--11---------------1------------------1-11-11-1111--122111122122-----1111111111--------------11-----------------------------------------------1-11--111111-11-2-------------------1-------1--------------11--1-1---1-----------1---1-11-----------------------------211---11-111111111111111111111--1----------11111111111111111-1111111111111111111111221121111111111111111211111111-111111111111----111111111--11-1111111111-1111--------------------------112111111111-11111111111112-----------------1--------------111----1--1111111111-1111111--111---1-11- 11----1-2--1----1--111122221111111111----11111-----11------111------------------------------1--1-1----1111-1-1212111--11-11-1111-371-11311-111111-11111-12-111111111111111-1112-------------------131-- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 234 STR:RPRED 91.1 SQ:SECSTR #######################TTccHHHHHHHHHHTTcccccccEEEEcGGGHHHHHHHHccccccEEEEEEcTTTccccHHHHHHHHHHHHHHTccEEEEEccHHHHHHcHHHHHHHHHHHHHHHHHHTcEEEEEccHHHHccHHHHHHHHHHHHTTTccEEEcccccccccccHHHHHHHHHHHHHGTTTcEEEEEcccccHHHHHHHHHHccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTc DISOP:02AL 1-6,248-258| PSIPRED cccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccEEEEEEcHHHHHHHHHHHHccccccEEEEEccccccccHHHHHHHHHHHHHccccEEEEcccHHHHHcccHHHHHHHHHHHHHHcccccEEEEEEccccccHHHHHHHHHHHHHHHcccEEEEccccccccccHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHHHHHHcHHcccHHHHHccHHHHHHHHHHHHHccccccccccc //