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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : dnaE.1
DDBJ      :dnaE         DNA polymerase III, alpha chain
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  908/915 : Eukaryota  3/199 : Viruses  3/175   --->[See Alignment]
a.4.6b.29.1b.40.4b.42.4c.6.3d.58.1
:1167 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->918 2hnhA PDBj 0.0 48.5 %
:RPS:PDB   20->1111 3e0dA PDBj 0.0 41.7 %
:RPS:SCOP  82->181 1q16B  d.58.1.5 * 4e-20 13.1 %
:RPS:SCOP  329->450 1r8nA  b.42.4.1 * 2e-34 16.7 %
:RPS:SCOP  427->531 1fc3A  a.4.6.3 * 3e-24 7.6 %
:RPS:SCOP  705->886 1kitA2  b.29.1.8 * 3e-51 10.8 %
:RPS:SCOP  968->1100 1asyA1  b.40.4.1 * 6e-16 7.1 %
:HMM:SCOP  19->288 1m65A_ c.6.3.1 * 1e-13 22.3 %
:RPS:PFM   23->165 PF02811 * PHP 1e-08 37.4 %
:RPS:PFM   333->753 PF07733 * DNA_pol3_alpha e-160 64.2 %
:RPS:PFM   1016->1080 PF01336 * tRNA_anti 2e-05 30.8 %
:HMM:PFM   322->753 PF07733 * DNA_pol3_alpha 3.3e-176 57.6 415/422  
:HMM:PFM   21->201 PF02811 * PHP 1.9e-28 28.9 166/175  
:HMM:PFM   1013->1083 PF01336 * tRNA_anti 3.2e-08 27.9 68/76  
:HMM:PFM   847->897 PF04919 * DUF655 5e-06 36.0 50/181  
:BLT:SWISS 19->1165 DPO3A_CAUCR 0.0 51.3 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87085.1 GT:GENE dnaE.1 GT:PRODUCT DNA polymerase III, alpha chain GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1279704..1283207 GB:FROM 1279704 GB:TO 1283207 GB:DIRECTION + GB:GENE dnaE GB:PRODUCT DNA polymerase III, alpha chain GB:PROTEIN_ID AAK87085.1 GB:DB_XREF GI:15156343 GB:GENE:GENE dnaE LENGTH 1167 SQ:AASEQ MGDTVVRGETSGETLKTPGFVHLRVHSAYSLLEGALPLKKIMSKAVGDGQPAIAITDTNNLFVALEFSEKARDEGLQPIIGCQLSIDMQDAAEDRRNHNSHLQKLPAIVLLAANAEGYERLVDLVSRAYLDGEGGSHSVHITRAWLEEASNAGLIALTGASGGPVDMALKEGHAAQAKERLLTLKSLFGDRLYIELQRQSGYDRSHERRLIGLAYEHDIPLVATNEAFFPSKADYEAHDALMAVAHNAIVSDDSRFRLTPDHYLKSRDEMTALFADLPEALENTVEIALRCSYVLKKRGPILPRFTGASDDPEAAERAETEELRRQAVEGLDQRLSALGMAPGYTEQDYRERLDFELGVISRMKFPGYFLIVADFIKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMPDFDIDFCQDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKICKLVPNNPANPTPLSKAIEEEPRLQEEADKEPVVARLLDIAQKIEGLYRHASTHAAGIVIGDRPLSKLVPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFVAKRGIKVDLAAIPLEDAKTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIALVALYRPGPMENIPVYNARKHGEEELESIHPTIDHLLKETQGVIVYQEQVMQIAQVLSGYSLGEADLLRRAMGKKIKEEMDQQRERFVDGAIKNGVSKPQANTIFDLLAKFANYGFNKSHAAAYAIVSYQTAYMKAHYPVEFLAASMTLDMANTEKLNDFRQDAGRLGIEVVAPSVQTSFRQFETGENRIYYSLAAIKGVGEGAVEHIVQVRGEKPFTSLEDFCLRIDPKQINRRVLESLINAGAFDCFGRDRAELIGGLDRIIGYAQMAQNNRTIGQSDMFGSGGGTGPEKLILPAFQSWLPSEKLIREYQVLGFYLTAHPLDTYRPLLEKLRVQNFADFSAAVKQGASTVGRLAGTVTGKQERKTRTGNKMGIVTFSDASGQYEAVLFSEGLAQFRDLLEVGKSLVINVQAEERPEGIGLRIQTAQSLEEKSVQMQKALRVYVRDSGPLKTVARHLNTKGDGSVYFIVIKDEGSREIEVELTEKYRISPEIAAALRSAPGVVDVELV GT:EXON 1|1-1167:0| BL:SWS:NREP 1 BL:SWS:REP 19->1165|DPO3A_CAUCR|0.0|51.3|1126/1143| SEG 313->325|eaaeraeteelrr| BL:PDB:NREP 1 BL:PDB:REP 15->918|2hnhA|0.0|48.5|878/910| RP:PDB:NREP 1 RP:PDB:REP 20->1111|3e0dA|0.0|41.7|1066/1148| RP:PFM:NREP 3 RP:PFM:REP 23->165|PF02811|1e-08|37.4|131/177|PHP| RP:PFM:REP 333->753|PF07733|e-160|64.2|419/428|DNA_pol3_alpha| RP:PFM:REP 1016->1080|PF01336|2e-05|30.8|65/74|tRNA_anti| HM:PFM:NREP 4 HM:PFM:REP 322->753|PF07733|3.3e-176|57.6|415/422|DNA_pol3_alpha| HM:PFM:REP 21->201|PF02811|1.9e-28|28.9|166/175|PHP| HM:PFM:REP 1013->1083|PF01336|3.2e-08|27.9|68/76|tRNA_anti| HM:PFM:REP 847->897|PF04919|5e-06|36.0|50/181|DUF655| GO:PFM:NREP 5 GO:PFM GO:0003824|"GO:catalytic activity"|PF02811|IPR004013| GO:PFM GO:0005737|"GO:cytoplasm"|PF07733|IPR011708| GO:PFM GO:0006260|"GO:DNA replication"|PF07733|IPR011708| GO:PFM GO:0008408|"GO:3'-5' exonuclease activity"|PF07733|IPR011708| GO:PFM GO:0003676|"GO:nucleic acid binding"|PF01336|IPR004365| RP:SCP:NREP 5 RP:SCP:REP 82->181|1q16B|4e-20|13.1|99/509|d.58.1.5| RP:SCP:REP 329->450|1r8nA|2e-34|16.7|114/185|b.42.4.1| RP:SCP:REP 427->531|1fc3A|3e-24|7.6|105/119|a.4.6.3| RP:SCP:REP 705->886|1kitA2|3e-51|10.8|176/197|b.29.1.8| RP:SCP:REP 968->1100|1asyA1|6e-16|7.1|127/137|b.40.4.1| HM:SCP:REP 19->288|1m65A_|1e-13|22.3|229/0|c.6.3.1|1/1|PHP domain-like| OP:NHOMO 1268 OP:NHOMOORG 914 OP:PATTERN -------------------------------------------------------------------- 3222222222222222222-22112222222222222222222232222211242221112222113232111112111111211111111111111112131224141311111111111111111111-111111111111112222122211221111112221222211111111111121111111211111111111111121111112111111111111111111111111111111111112111111111111111111211111111111111111111111111111111111111111111111111111121211211111111111111-2111122112111111111212211111212322211111222223222222222122221213122223222322-3442332333232322232221222221111111124221211111111111111111111111111111111222212221242532232222333223222224222221122223422222231222211111111111111222222131111111111121211112122222212111111111111111111111111122111222121112111111111112112111111123111111111111111111111111-11111111111111111111111111111111111111211111111111111112112222111111111111111121211111111111-11111111111111111222222222222222221111111111111111111222222222222222111111111111111111111111111111-11111111111111211112122122121121 -------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------1--------------4---------- --------------1-----------------------------------------------------------------1---------------------------------------------1------------------------------------------------ STR:NPRED 1101 STR:RPRED 94.3 SQ:SECSTR TccEEEEEEEcccccHHEEccccccccTTcTTTccccHHHHHHHHHcccccEEEEEEETccTTHHHHHHHHHTTTcEEEEEEEEEEEcccTTccccccEEEHGGGccEEEEEccHHHHHHHHHHHHHHHHTccccccHHEEcHHHHHHTcTHTEEEEcccTTcHHHHHHHTTcHHHHHHHHHHHHHHHGGGEEEEEccccHHHHHHHHHHHHHHHHTTccEEEccccccccGGGHHHHHHHHHHHTTcccccccccccccccccccHHHHHHHccHHHHHHHHHHHHHHTcccccccTTccccccHHHHHHHHHHHTTccHHHHHHHHHHccHHHHTTTTTccccHHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHHHHTTTcccccccGGGGGcHHHHHTTcccccTTTTTccHHHHccTTcccccccEEEEETTTHHHHHHHHHHHHcTTTEEEEEEEccccHHHHHHHHHHHTTccHHHHHHHHTTccccccccccTTTTTcccTTTTTHHHHcHHHHHHHHHHHHcTTccccEEEcccEEEEccccGGGTccEEEGcTTccEEEEEEHHHHHTTTcEEEEEEEEHHHHHHHHHHHHHHHHcccccGGGccTTcHHHHHHHHTTccTTcTTcccHHHHHHHHHHccccHHHHHHHHHHccTTGGGHHHHHHHHHTTccccTTTHHHHHHHHGGGTTccccHHHHHHHHHHHccccHHHHHHHHHHHHHTcTTTHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHTTccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHTTTcHHHHHHHHHHHHTTcccEEcccTTTcccccEEETTEEEcccTTcccccHHHHHHHHHHHHHcccccHHHHHHHccTTTccHHHHHHHHHHTTTGGGcccHHHHHHHHHHHHHHHHHHHHHHTTccccccccccccccccccccccccccHHHHHHHHHHHHcccccccGGGTcHHHHH#HccccGGGHHHHHccccccEEEEEEEEccccEEEEETTEEEEEcc#TTcEEEEccEE#EEEEccHHHHTTccccEEEEEcc#cccTTTccHHH##HHHHTc####EEEEEEEEEEEccccE######################################################## DISOP:02AL 1-19, 930-934, 937-938| PSIPRED cccEEccccccccccccccEEEEEcccccHHHHHcccHHHHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHccccEEEEEEEEEEcccccccccccccccccccEEEEEEccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHccccEEEEccccccHHHHHHHcccHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHHHHHcccEEEccccHHccHHHHHHHHHHHHHHcccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccEEEcccccHHHHHHHHHHHcccccccccccccccccccccccccEEEcccccccHHHHHHHHHHHcccccEEEEEEEccHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccccccEEEEEcccccEEEEcEEEcccccEEEEEEcHHHHHHcccEEEEEEccccHHHHHHHHHHHHHccccccHHHcccccHHHHHHHHcccEEEEcccccHHHHHHHHHcccccHHHHHHHHHHcccccHHHHHHHHHcccccccccccHHHHHHHHHHHccccEEHHHHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHcccccHHHHHHHHHHHHHcccEEccccccccccEEEEcccEEEccHHHcccccHHHHHHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHcccHHcccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHcEEEccccHHHHHHHHHHHccccHHHHHHHHcccccEEEEEEEEEEEEEEEccccccEEEEEEEEccccEEEEEEcHHHHHHHHHHHccccEEEEEEEEEEEccEEEEEEEEcccHHHHHHHHHccEEEEEccHHHHHHHHHHHHccccccEEEEEEEccccEEEEEEEcccEEEcHHHHHHHHHccccccEEEc 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