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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : dppA.1
DDBJ      :dppA         ABC transporter, substrate binding protein (dipeptide)
Swiss-Prot:             

Homologs  Archaea  22/68 : Bacteria  520/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
c.94.1
:531 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   62->521 1dppA PDBj 4e-23 26.2 %
:RPS:PDB   31->530 3dp8B PDBj 2e-72 18.7 %
:RPS:SCOP  30->516 1uqwA  c.94.1.1 * 1e-74 20.0 %
:HMM:SCOP  24->520 1jetA_ c.94.1.1 * 1.5e-97 29.6 %
:RPS:PFM   79->443 PF00496 * SBP_bac_5 1e-34 30.6 %
:HMM:PFM   76->442 PF00496 * SBP_bac_5 1.7e-72 28.8 354/372  
:BLT:SWISS 24->521 DDPA_ECOLI 7e-49 31.9 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88249.2 GT:GENE dppA.1 GT:PRODUCT ABC transporter, substrate binding protein (dipeptide) GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2486546..2488141) GB:FROM 2486546 GB:TO 2488141 GB:DIRECTION - GB:GENE dppA GB:PRODUCT ABC transporter, substrate binding protein (dipeptide) GB:PROTEIN_ID AAK88249.2 GB:DB_XREF GI:159140512 GB:GENE:GENE dppA LENGTH 531 SQ:AASEQ MISRRNLLIAGAAVPFLSYARIPAFAATPKDILVVAQQLDNMTSLDPHEGFEAVGGEIISNMYQKLVRANREDSTKVDPVIAKSWEADADSKVFTFVIGDEATFASGAKVTAEDVAFSLQRAIKMNKSPAFIISQFGFTPDNAETTIVAADDKTVKLTTAKPTAISFLLYCLSANIGAIVEKKAVLANAAGEDLGNGWLQKNSAGSGDFMLQAWKPSESVALIVNPNGPYKGNIKRIVLRHVTDPSSQLLMLQKGDIDIARDLTSEQLRTVKDDANIELERKSIASLVLISLNQGNENLAKPQVWQAIKWALDYKGMQENIVPLTHEIHQSFEPKGFPGAVNDIPYQRDVEKAKALMAEAGLADGFEISMDHYSAQPYPDLAQAIQANLADIGIKVRLQSAENRQVLTKMRAREHQMALSAWGTDYFDPHSNADVFNINKDNGDDVKSKPFLWRSRFKNDDFAAKAEAARDERDPAKRIELYEALQREHMENSPFVFMFQTTKTAAFRKGVSGFELGVLSEGNSYHDAKKA GT:EXON 1|1-531:0| BL:SWS:NREP 1 BL:SWS:REP 24->521|DDPA_ECOLI|7e-49|31.9|479/516| TM:NTM 2 TM:REGION 13->35| TM:REGION 159->181| SEG 463->477|aakaeaarderdpak| BL:PDB:NREP 1 BL:PDB:REP 62->521|1dppA|4e-23|26.2|447/507| RP:PDB:NREP 1 RP:PDB:REP 31->530|3dp8B|2e-72|18.7|477/497| RP:PFM:NREP 1 RP:PFM:REP 79->443|PF00496|1e-34|30.6|353/366|SBP_bac_5| HM:PFM:NREP 1 HM:PFM:REP 76->442|PF00496|1.7e-72|28.8|354/372|SBP_bac_5| GO:PFM:NREP 2 GO:PFM GO:0005215|"GO:transporter activity"|PF00496|IPR000914| GO:PFM GO:0006810|"GO:transport"|PF00496|IPR000914| RP:SCP:NREP 1 RP:SCP:REP 30->516|1uqwA|1e-74|20.0|464/487|c.94.1.1| HM:SCP:REP 24->520|1jetA_|1.5e-97|29.6|477/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 2076 OP:NHOMOORG 545 OP:PATTERN 22--2-1---------1-1111-11---1-3--------------2-2--962-1-1---1---3--- 11--1111221-1--------1---3------13331436-4-6361211--232-11--23-1333244-32223331-1-21-------------------------1---------------2112-1112211112-11-491---11-----------1--2--32------------C46113211227888969958997898866417962-38632111111S41--------------1---12--1--1----11------1-1--------111---------------------------2----1----16132333122221322223111221416-1-135641--31--16113611-----15226118AF---41-3-4444445444I-1151-424GD--VEEF885BAACBC3-111767577287--------1--11-64-----------------------------------8B9A766677646666658966662666B4233--444-152432826C11--31251--------------24-2125--31111-1-11111-----1-1111-1-1111111-1111111---11--562-1211--2-----111------11--1--11---------7AGC5AA5555564545-5555555555565565665999CA3574434454444444445D44444454-533344434444---1-----------435444-11121214133---------3515555454A44355-9AA1-11-11---33344444434533-----------------E------455232112----1-----------------------11112522224- -------------1-----------------------------------------------------------------------------------------------------------------------------------------------------2---------------------1------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 518 STR:RPRED 97.6 SQ:SECSTR ############cccccccEEccccccccccEEEEEEcccccccccTTccTTccHHHHHHHHccccEEEcTTcTccEEEccEEEEEEcTTccEEEEEEccccccTTcccccHHHHHHHHHHHHTTGGGGTTcHHHHHEEcTTHHcEEEEccccEEEEEEccccTTGTHHHHHTcccccccccGGGHTHHHccccccTTccccccccccEEEEEEETTTEEEEEEcTTccccccccEEEEEEcccHHHHHHHHHTTcccEEEcccHHHHHHHHTcTTcEEEEccccEEEEEEEcTTcTTTTcHHHHHHHHHHccHHHHHHTTTccccccccccccTTcTTccccccccccHHHHHHHHHHTTcccccEEEEEEETTcHHHHHHHHHHHHHHTTTcEEEEEEEcHHHHHHHHHHTcccEEEEEcccTTTTTHHHHHGGGccccHHHHHcTTcHHTTTcTTHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHTTcEEEEEEEcEEEEEcGGGccccccccTTcccGGGccc# DISOP:02AL 1-2,24-27| PSIPRED cccHHHHHHHHHHHHHHHHHcccccccccccEEEEEEEccccccccccEEcccHHHHHHHHHHHHHEEEcccccccEEEEEEEEEEEcccccEEEEEEccccEEcccccccHHHHHHHHHHHHcccccHHHHHHHHcccccccEEEEEEccccEEEEEEccccccHHHHHHHcccccccccHHHHHccccccccccccccccccccccEEEEEEEcccEEEEEEcccccccccccEEEEEEEccHHHHHHHHHcccccEEccccHHHHHHHHccccEEEEEccccEEEEEEEcccccccccHHHHHHHHHHccHHHHHHHHHccccEEEccccccccccccccccccccHHHHHHHHHHcccccccEEEEEEcccccHHHHHHHHHHHHHHcccEEEEEEccHHHHHHHHHcccccEEEEEcccccccHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccEEEEEEccEEEEEEccEEEEEEccccccccHHHEEEc //