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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : fdhD
DDBJ      :fdhD         NAD-dependent formate dehydrogenase, C subunit protein
Swiss-Prot:FDHD_AGRT5   RecName: Full=Protein fdhD homolog;

Homologs  Archaea  26/68 : Bacteria  480/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
c.97.1
:271 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   18->270 2pw9D PDBj 1e-19 31.9 %
:RPS:SCOP  18->270 2pw9A1  c.97.1.5 * 2e-53 29.5 %
:RPS:PFM   33->269 PF02634 * FdhD-NarQ 5e-40 44.6 %
:HMM:PFM   32->269 PF02634 * FdhD-NarQ 5.5e-77 43.2 234/236  
:BLT:SWISS 1->271 FDHD_AGRT5 e-138 100.0 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88341.2 GT:GENE fdhD GT:PRODUCT NAD-dependent formate dehydrogenase, C subunit protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2603089..2603904) GB:FROM 2603089 GB:TO 2603904 GB:DIRECTION - GB:GENE fdhD GB:PRODUCT NAD-dependent formate dehydrogenase, C subunit protein GB:PROTEIN_ID AAK88341.2 GB:DB_XREF GI:159140554 GB:GENE:GENE fdhD LENGTH 271 SQ:AASEQ MIVVSVEASYRRVARTALREGTPATGERAVPEEVPVAFSYGGSTHAVMMASPADLIDFAVGFSLTEGIISMRSEIQAIEVVEAGQGYDVQVDLTDAEADALRARRRHMAGPVGCGLCGIESIEQAVRVVPDLSSVKSSVHGNDIVAAVKALNDAQTLNRETRAVHGAGFYNPREGLLAVREDVGRHNALDKLAGAVVNAGISAQMGIVAVTSRLSVEMVQKTAILGCPVLAAISAPTALAIETADRAGITLVALVRGEDFEIFTRADRIIL GT:EXON 1|1-271:0| SW:ID FDHD_AGRT5 SW:DE RecName: Full=Protein fdhD homolog; SW:GN Name=fdhD; OrderedLocusNames=Atu2619; ORFNames=AGR_C_4748; SW:KW Complete proteome; Cytoplasm. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->271|FDHD_AGRT5|e-138|100.0|271/271| GO:SWS:NREP 1 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| TM:NTM 2 TM:REGION 191->213| TM:REGION 220->242| SEG 92->106|dltdaeadalrarrr| BL:PDB:NREP 1 BL:PDB:REP 18->270|2pw9D|1e-19|31.9|226/237| RP:PFM:NREP 1 RP:PFM:REP 33->269|PF02634|5e-40|44.6|231/234|FdhD-NarQ| HM:PFM:NREP 1 HM:PFM:REP 32->269|PF02634|5.5e-77|43.2|234/236|FdhD-NarQ| GO:PFM:NREP 2 GO:PFM GO:0008863|"GO:formate dehydrogenase activity"|PF02634|IPR003786| GO:PFM GO:0009326|"GO:formate dehydrogenase complex"|PF02634|IPR003786| RP:SCP:NREP 1 RP:SCP:REP 18->270|2pw9A1|2e-53|29.5|220/231|c.97.1.5| OP:NHOMO 603 OP:NHOMOORG 509 OP:PATTERN ------11111111111---------------2-1--------1212111-11------1-111---- ---111-1111---11111-11--121111111111112111-11-11----1211-1----1-1121111---------211----------------------1-1----------------------------11111---------11-----------------11------------11-11---1-12222222212222221111112211111---1111111-1111111111111111--11-----------------------------------------------------------------------11-1-----------1-----------3--11111111-111-------11-111------113111-1121111111111--11-1111111111--11111111112111--1111111111111111111111-12-------------------------------1-111-111-22221221111122111111112113333-12222211111-12133--11111----------21--111111111111--313-2121---1-113211---11111--1-------131--2233----3-1-111222-2232211221111-------------11111111111111111-111111111111111111111111111111111111111111111111111--111111111111-------------1--11111111111111--111111-11111-11111121111112111----------111111111121111111111111------------------------------------------------------------11- -------------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 241 STR:RPRED 88.9 SQ:SECSTR #################EccccEEEEEEEEEccEEEEEEETTEEEEEEEEccccHHHHHHHHHHHTTccccGGGEEEEEEETTTE###EEEEEEEccccccccccHHHccccccccccHccccccccccccHHHHHHHHHccc#####HHHTccc#HHHHHcccEEEEEEE##TTEEEEEEEccHHHHHHHHHHHHH#TTccccccEEEEcccccHHHHHHHHHTTccEEEEcccccHHHHHHHHHHTcEEEEEEETTEEEEEEcGGGcc# DISOP:02AL 1-1,6-7| PSIPRED cEEEEEEccccEEEEEEEEccEEEEEEEEEEEEEEEEEEEccEEEEEEEEccccHHHHHHHHHHcccccccHHHEEEEEEEccccEEEEEEEEccccccccHHccEEEEEccccccccHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEEEccHHHHHHHHHHHHHHccccHHcEEEEEEccccHHHHHHHHHccccEEEEEccccHHHHHHHHHHcccEEEEEEcccEEEEccccEEEc //