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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : fliN
DDBJ      :fliN         flagellar motor switch protein FliN
Swiss-Prot:FLIN_AGRT5   RecName: Full=Flagellar motor switch protein fliN;

Homologs  Archaea  0/68 : Bacteria  420/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
b.139.1
:179 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   96->178 1yabB PDBj 1e-16 42.5 %
:RPS:SCOP  96->178 1o6aA  b.139.1.1 * 4e-14 40.0 %
:HMM:SCOP  96->178 1o6aA_ b.139.1.1 * 2.8e-17 35.0 %
:RPS:PFM   99->177 PF01052 * SpoA 4e-10 35.5 %
:HMM:PFM   100->175 PF01052 * SpoA 1.8e-22 37.0 73/77  
:BLT:SWISS 1->179 FLIN_AGRT5 2e-75 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86374.2 GT:GENE fliN GT:PRODUCT flagellar motor switch protein FliN GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 547646..548185 GB:FROM 547646 GB:TO 548185 GB:DIRECTION + GB:GENE fliN GB:PRODUCT flagellar motor switch protein FliN GB:PROTEIN_ID AAK86374.2 GB:DB_XREF GI:159139682 GB:GENE:GENE fliN LENGTH 179 SQ:AASEQ MATKKTPVTDDAALPSFEDGVDLDQAIGDLRGVLKTDAEGSLSDFGDFGDFGSTDEVSTDNDLSAFGGGAADFAMDDFAAAPQVAGVKAPLGSGLSENMEMIMDIPIDVQIVLGTSRMLVSGLMSLEEGATIALDRKIGEPVEIMVNGRRIARGEITVLEDDDTRFGVKLIEVLSTRKA GT:EXON 1|1-179:0| SW:ID FLIN_AGRT5 SW:DE RecName: Full=Flagellar motor switch protein fliN; SW:GN Name=fliN; Synonyms=filN; OrderedLocusNames=Atu0562;ORFNames=AGR_C_988; SW:KW Bacterial flagellum; Cell inner membrane; Cell membrane; Chemotaxis;Complete proteome; Flagellar rotation; Membrane. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->179|FLIN_AGRT5|2e-75|100.0|179/179| GO:SWS:NREP 6 GO:SWS GO:0009288|"GO:bacterial-type flagellum"|Bacterial flagellum| GO:SWS GO:0005886|"GO:plasma membrane"|Cell inner membrane| GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0006935|"GO:chemotaxis"|Chemotaxis| GO:SWS GO:0001539|"GO:ciliary or flagellar motility"|Flagellar rotation| GO:SWS GO:0016020|"GO:membrane"|Membrane| SEG 40->53|gslsdfgdfgdfgs| SEG 65->81|afgggaadfamddfaaa| BL:PDB:NREP 1 BL:PDB:REP 96->178|1yabB|1e-16|42.5|80/87| RP:PFM:NREP 1 RP:PFM:REP 99->177|PF01052|4e-10|35.5|76/77|SpoA| HM:PFM:NREP 1 HM:PFM:REP 100->175|PF01052|1.8e-22|37.0|73/77|SpoA| RP:SCP:NREP 1 RP:SCP:REP 96->178|1o6aA|4e-14|40.0|80/87|b.139.1.1| HM:SCP:REP 96->178|1o6aA_|2.8e-17|35.0|80/87|b.139.1.1|1/1|Surface presentation of antigens (SPOA)| OP:NHOMO 445 OP:NHOMOORG 421 OP:PATTERN -------------------------------------------------------------------- ----------------------------------------1---1---1----1--------1-1--------------------11----------------------------------------------------------1---------------------------------------------111---------------111111----111111------11------------------------------------------------------------------------------------------1211111111111111-111---111---111111-11111-211111--11111111----112111111211211111111111-11111-2211111111111111111-111---1211-----------1111-142--------------------------------1--11-111111111111111111111111111111--111111111--111111111111-------111-111-1-1-11111111111111111111-1--1---1--111111111111111-------12-1111111-1211111211121122211---1111-1-11111111111111111111-1111111111111-11--1---1111-1111111111111111111-1111211111111-1111---------1111--111-------------------------1111111111111111111---------1111111111111111111111112------121111221111111111--------------------------1--1111-11--- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1---------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 80 STR:RPRED 44.7 SQ:SECSTR ###############################################################################################ccccHHHHTccccEEEEcccccccTTGGGTccTTccccccccccccEEEEETTEEEEEEEEEEE###TTEEEEEEEEEccHHH# DISOP:02AL 1-6,8-8,72-100,176-180| PSIPRED cccccccccccccccHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHccccccccccccHHHccccccccccccccccccccccccccccccHHHHHHHHccEEEEEEEEEEEEEcHHHHHccccccEEEcccccccEEEEEEccEEEEEEEEEEEcccccEEEEEEEEEEccccc //