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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : garD
DDBJ      :garD         D-galactarate dehydratase
Swiss-Prot:             

Homologs  Archaea  12/68 : Bacteria  245/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
:510 amino acids
:PSIPRED
:DISOPRED
:RPS:PFM   16->84 PF08666 * SAF 5e-09 52.3 %
:RPS:PFM   110->509 PF04295 * GD_AH_C e-115 54.3 %
:HMM:PFM   109->509 PF04295 * GD_AH_C 5.3e-167 51.9 393/395  
:HMM:PFM   15->83 PF08666 * SAF 2.1e-16 50.8 61/63  
:BLT:SWISS 14->488 GARD_BACSU 6e-80 37.7 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88534.2 GT:GENE garD GT:PRODUCT D-galactarate dehydratase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2824712..2826244 GB:FROM 2824712 GB:TO 2826244 GB:DIRECTION + GB:GENE garD GB:PRODUCT D-galactarate dehydratase GB:PROTEIN_ID AAK88534.2 GB:DB_XREF GI:159140648 GB:GENE:GENE garD LENGTH 510 SQ:AASEQ MSENSEATILLNANDNVAVARRSIPAGGATGRGDLAALELIGRGHKVALKLIKSGDEVLKYGQVIGIATQDIEAGRHVHLHNLAMVPSEHAHQFSVDIEEKGMVPEAERRTFMGYDRGLGGVGTRNYIGVIASVNCSATVSRYIADYFNKQGGLDGFDNVDGVVALTHGGGCALNTKSEGYRLLIRTIQGYARHPNFGGILLIGLGCETNQIAPILEHYKMEEGERLRTMTIQQHGGTRKTIDAAITEIKAMLPMVNAARRTEQPLSKLKVALECGGSDGYSGISANPALGYASDLIVRNGGTTVLSETPEIYGAEHLLTKRAVTPAVAEKLLQRIDWWRDYTARNGDELNNNPSHGNKLGGLTTILEKSLGAVAKGGSMPLKAVYEFAETVTEQGFVFMDTPGYDPVAVTGQVAGGCNVICFTTGRGSVSGFKPSPCIKIATNSEMYEHMKEDMDINCGEIVTGTETIEESGKRIFEHILAVASGDKTVSEIYDYGDNEFVPWQVGAVT GT:EXON 1|1-510:0| BL:SWS:NREP 1 BL:SWS:REP 14->488|GARD_BACSU|6e-80|37.7|467/510| SEG 460->471|geivtgtetiee| RP:PFM:NREP 2 RP:PFM:REP 16->84|PF08666|5e-09|52.3|65/67|SAF| RP:PFM:REP 110->509|PF04295|e-115|54.3|392/395|GD_AH_C| HM:PFM:NREP 2 HM:PFM:REP 109->509|PF04295|5.3e-167|51.9|393/395|GD_AH_C| HM:PFM:REP 15->83|PF08666|2.1e-16|50.8|61/63|SAF| GO:PFM:NREP 1 GO:PFM GO:0016836|"GO:hydro-lyase activity"|PF04295|IPR007392| OP:NHOMO 423 OP:NHOMOORG 261 OP:PATTERN ------2-22222222-4-------------------------------------------22----- 1-2-----------------------------------1-----11-------------------11---------------2-------11-------1-1-1-2-1-2-------------------------------------------------------------------------------1-1-1---------------412212----22-----------1-------------------------------------------------------------------------------------------1-11-----------3------1-----1---33------3-12-------13111-------222--1-----11111-111-1---2--3-311--222211111111321-11-211111-1--------1------------------------------------1-2-1-----33221222-11-11431111-21133741-11121-21-2231451----------------------2---11-1----2---------------1-----1-1---1-------------------2--1--1---------1------1-----------------212212-2222222222-222222224222222222222222---212112222222221-1-112212--111111111111----------------31---2-2---------11-1-11---12----1-1112222-111-------------1-------------1-11-------------------------------------------------------------2---- ------1-----------------------------------------------------------------------------------------------------1-------------------------------------------------------------------------------1---------1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- DISOP:02AL 1-4,101-103,349-353| PSIPRED cccccccEEEEcccccEEEEccccccccEEcccEEEEEcccccccEEEEEEcccccEEEEcccEEEEEccccccccEEEEEEEEcccccccccccccccccccccccccccEEEEEcccccEEEEEEEEEEEccccHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccccccccHHHHHHHHHHHcccccEEEEEEEEEccccccHHHHHHHHHccccccEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHccccEEEHHHEEEEEEEccccccccHHHHHHHHHHHHHHHHccccEEEEEcccEEcHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHccccccccccccHHHccccHHHHHHHHHHHHcccccEEEEEccccccccccEEEEEccccHHHHHHHHHHcccEEEEEEcccccccccccccEEEEEccHHHHHHHHHcccccccccEEccccHHHHHHHHHHHHHHHHcccccHHHHccccccEEEEccccccc //