[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : gbpR
DDBJ      :gbpR         transcriptional regulator, LysR family
Swiss-Prot:             

Homologs  Archaea  4/68 : Bacteria  515/915 : Eukaryota  4/199 : Viruses  0/175   --->[See Alignment]
a.4.5c.94.1
:304 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   23->70 1iz1B PDBj 6e-04 35.4 %
:BLT:PDB   100->189 2esnC PDBj 2e-04 29.6 %
:RPS:PDB   3->233 1b9nB PDBj 3e-20 11.2 %
:RPS:SCOP  3->100 1b9mA1  a.4.5.8 * 4e-14 18.4 %
:RPS:SCOP  89->300 1al3A  c.94.1.1 * 1e-19 17.1 %
:HMM:SCOP  1->110 1b9mA1 a.4.5.8 * 6.9e-25 41.7 %
:HMM:SCOP  80->299 1uthA_ c.94.1.1 * 1.5e-33 28.8 %
:RPS:PFM   89->294 PF03466 * LysR_substrate 4e-14 32.7 %
:HMM:PFM   85->297 PF03466 * LysR_substrate 2.3e-33 27.8 205/209  
:HMM:PFM   2->60 PF00126 * HTH_1 4e-19 39.0 59/60  
:BLT:SWISS 1->287 GBPR_RHIRD e-128 87.5 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88092.2 GT:GENE gbpR GT:PRODUCT transcriptional regulator, LysR family GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2327065..2327979 GB:FROM 2327065 GB:TO 2327979 GB:DIRECTION + GB:GENE gbpR GB:PRODUCT transcriptional regulator, LysR family GB:PROTEIN_ID AAK88092.2 GB:DB_XREF GI:159140438 GB:GENE:GENE gbpR LENGTH 304 SQ:AASEQ MSHLRMLVMIEEHGQVSAAAAAMNMTQPAASRMLSEMEAIVKSPLCQRASRGVVLTKFGEALARRARTILLELREASRELNQMKSGSGGSVYIGAVTAPAISLVVPAIRRAMDTYPGIEINVQVESSNVLARELLAARHDFIIGRIPDDFDPGLFSIHEIGIERACLVVREGHPLMRGEPVTLQDLSGYDWVFQPPGALLRRTMEDVFLTHGVAMPRNVINTPSVVLTLALVCNTNAIAPIAQDMAEFVAGQQADIGRTRILPTDFELVVKPYSIITTKGRVLPPSARLLYDLVLDESRKLTNT GT:EXON 1|1-304:0| BL:SWS:NREP 1 BL:SWS:REP 1->287|GBPR_RHIRD|e-128|87.5|280/302| SEG 18->22|aaaaa| BL:PDB:NREP 2 BL:PDB:REP 23->70|1iz1B|6e-04|35.4|48/294| BL:PDB:REP 100->189|2esnC|2e-04|29.6|81/298| RP:PDB:NREP 1 RP:PDB:REP 3->233|1b9nB|3e-20|11.2|223/245| RP:PFM:NREP 1 RP:PFM:REP 89->294|PF03466|4e-14|32.7|199/207|LysR_substrate| HM:PFM:NREP 2 HM:PFM:REP 85->297|PF03466|2.3e-33|27.8|205/209|LysR_substrate| HM:PFM:REP 2->60|PF00126|4e-19|39.0|59/60|HTH_1| RP:SCP:NREP 2 RP:SCP:REP 3->100|1b9mA1|4e-14|18.4|98/122|a.4.5.8| RP:SCP:REP 89->300|1al3A|1e-19|17.1|205/237|c.94.1.1| HM:SCP:REP 1->110|1b9mA1|6.9e-25|41.7|103/0|a.4.5.8|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 80->299|1uthA_|1.5e-33|28.8|212/0|c.94.1.1|1/1|Periplasmic binding protein-like II| OP:NHOMO 2341 OP:NHOMOORG 523 OP:PATTERN -------------------------------------11---1----------1-------------- 22--3--22221-1211----2---5------222229AD--1-1--2-1--2442-1--211-22D3753-111-----111-1----------------1-------1--------------------------34422----12224334221111111132245331111111111111--1-----2-444444444232346321223542211-31--11111-6D-11-1111-1111112--1----1111---1112211--2-----------------------------------------------------11---------------1112----5-2111111-11-4--------111411-1----2-8791122322333333333326-33-43944362-B885436946585A32133811131624444444433321144-------------------------------351-8QMCDOSTTWQ78887JJUT998A38fGHKTVM-1DB743B56F5J2QE44141--3211-11-11-1-121------112122-----111-1-11112111-------------------------4462---1--513-1----12----2-31-3----1122------82681438885855597-88788648778587778738A748111645555655565655684644446---22222222222---1-----12111117D111111-2222-3213323313---E1DCBDAGBD7HJFC387B---------2---111111222233556586565-------1----------------------------------------------------13- --------------------------------------------------------------------------------------------------------------------------------------------------------------2----------------1------------4-----2---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 301 STR:RPRED 99.0 SQ:SECSTR HHHHHHHHHHHHHccHHHHHHHHTccHHHHHHHHHHHHHHHTcccccccccHHEEcHHHHHHHHHHHHHHHHHHHHHHHHHcTTccccccHHHHHHTTTccccccEEEEEEHHHEcccEEEEEETTcccEEEEEccHHHHHHHTccTTcEEEEcGGGcEEEccHHHHTTccEEEEEEEEEEEEcccEEEEEEEcTTccEEEEEEEGGGcTTccTTcEEEEEEcGGGcEEEcccHTccEEEEEGGGccTTTcHTTTcTTcEEEEccTTcccEEEEEEEETTccccHHHHHHHHHHcTTccHH### DISOP:02AL 82-85,302-305| PSIPRED cHHHHHHHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccEEEEEccccEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEEEcHHHHHHHHHHHHHHHHHccccEEEEEEccHHHHHHHHHcccccEEEEEcccccccccEEEEEEEEccEEEEEcccccccccccccHHHHccccEEEcccccHHHHHHHHHHHHcccccccEEEEEccHHHHHHHHHccccEEEEEHHHHHHHHHHHHccccEEEEEccccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHcc //