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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : hemE
DDBJ      :hemE         uroporphyrinogen decarboxylase
Swiss-Prot:DCUP_AGRT5   RecName: Full=Uroporphyrinogen decarboxylase;         Short=URO-D;         Short=UPD;         EC=4.1.1.37;

Homologs  Archaea  4/68 : Bacteria  679/915 : Eukaryota  182/199 : Viruses  0/175   --->[See Alignment]
c.1.22
:344 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->337 3cyvA PDBj 2e-58 38.0 %
:RPS:PDB   6->341 2ejaB PDBj 2e-54 33.8 %
:RPS:SCOP  10->338 1jphA  c.1.22.1 * e-106 39.4 %
:HMM:SCOP  6->341 1uroA_ c.1.22.1 * 9.1e-102 44.4 %
:RPS:PFM   5->340 PF01208 * URO-D 5e-69 44.5 %
:HMM:PFM   2->339 PF01208 * URO-D 5.9e-115 45.0 333/343  
:BLT:SWISS 1->344 DCUP_AGRT5 e-179 100.0 %
:PROS 19->28|PS00906|UROD_1
:PROS 137->153|PS00907|UROD_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88546.1 GT:GENE hemE GT:PRODUCT uroporphyrinogen decarboxylase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2840340..2841374) GB:FROM 2840340 GB:TO 2841374 GB:DIRECTION - GB:GENE hemE GB:PRODUCT uroporphyrinogen decarboxylase GB:PROTEIN_ID AAK88546.1 GB:DB_XREF GI:15158065 GB:GENE:GENE hemE LENGTH 344 SQ:AASEQ MSERKVMTVLNGKTVTPPPIWLMRQAGRYLPEYRETRKSAGSFLDLCYNPELASEVTLQPIRRFGLDAAILFSDILVIPDALHRNVSFSEGKGPAMDPIDISGIEKLDASDVMAHLSPVFETVSRLRTSLPDETTLLGFCGAPWTVATYMIAGHGTPDQAPARLFGYQEPAAMEKLLALLAEVSADYLVAQIDAGADAVQIFDSWAGVLGEKEFEEYAIKPVARIIASVRARRPSAKIIAFAKGAGYLLRDYRRKTGANAIGLDWSVPLSFARDLQKEGPVQGNLDPMLMVAGGKALQDGIDAVLQSLGQGPLIFNLGHGITPQADPENVTRLVQRVRSVGGAG GT:EXON 1|1-344:0| SW:ID DCUP_AGRT5 SW:DE RecName: Full=Uroporphyrinogen decarboxylase; Short=URO-D; Short=UPD; EC=4.1.1.37; SW:GN Name=hemE; OrderedLocusNames=Atu2835; ORFNames=AGR_C_5140; SW:KW Complete proteome; Cytoplasm; Decarboxylase; Lyase;Porphyrin biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->344|DCUP_AGRT5|e-179|100.0|344/344| GO:SWS:NREP 4 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016831|"GO:carboxy-lyase activity"|Decarboxylase| GO:SWS GO:0016829|"GO:lyase activity"|Lyase| GO:SWS GO:0006779|"GO:porphyrin biosynthetic process"|Porphyrin biosynthesis| PROS 19->28|PS00906|UROD_1|PDOC00705| PROS 137->153|PS00907|UROD_2|PDOC00705| SEG 169->182|epaamekllallae| SEG 221->236|pvariiasvrarrpsa| BL:PDB:NREP 1 BL:PDB:REP 5->337|3cyvA|2e-58|38.0|332/352| RP:PDB:NREP 1 RP:PDB:REP 6->341|2ejaB|2e-54|33.8|328/336| RP:PFM:NREP 1 RP:PFM:REP 5->340|PF01208|5e-69|44.5|328/339|URO-D| HM:PFM:NREP 1 HM:PFM:REP 2->339|PF01208|5.9e-115|45.0|333/343|URO-D| GO:PFM:NREP 2 GO:PFM GO:0004853|"GO:uroporphyrinogen decarboxylase activity"|PF01208|IPR000257| GO:PFM GO:0006779|"GO:porphyrin biosynthetic process"|PF01208|IPR000257| RP:SCP:NREP 1 RP:SCP:REP 10->338|1jphA|e-106|39.4|327/357|c.1.22.1| HM:SCP:REP 6->341|1uroA_|9.1e-102|44.4|333/0|c.1.22.1|1/1|UROD/MetE-like| OP:NHOMO 998 OP:NHOMOORG 865 OP:PATTERN -----------------------------1-------------------------------111---- 1111111111111111111-111111111111111111111111111111111111111111111111111------------11111-----------111111111111111111111111111111111111111111---1111111111111111111111111111111111111111-111---11111111111111111111111111111111111111111111111111111111111111---------------------------------------------------------------------------------------------------------------1--------1111111-----111111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111---1----------111111111111111--111111111111111111111111111111111111111111111111111111111--11111------11111111111111111-11111111111111111111111111111111111111111111111111111111111111111--1111111111111111111111-----11111111111111111111111111111111111111111111111111111111111111111111111111-111111-----------------------------------------------1- 11--111-1---11111111111111111-11111112211111111111111111111111111111-1111111111111111111-11111111111111111-13-231111--111111111315D1-3111111111111111111-111112111131112131--122234w4443332541423321113 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 339 STR:RPRED 98.5 SQ:SECSTR ##ccHHHHHHTTccccccccccTTcccTTcHHHHHHHTTcccHHHHHHcHHHHHHHHHHHHHHHccccEEccccTTGGGGGGTcEEEEETTTEEEEccccGGGcccccGGGGGGGGHHHHHHHHHHHHHccccccEEEEEEcHHHHHHHHHTTTcccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHTTccEEEEEETTGGGccHHHHHHHTHHHHHHHHHHHHHHcccccEEEEEccHHHHHHHHTTTccccEEEccTTccHHHHHHHcccccEEccccGGGGGccHHHHHHHHHHHHTTcccccEEccccccccTTccHHHHHHHHHHHHTcc### DISOP:02AL 342-344| PSIPRED cccHHHHHHHcccccccccEEEEcccccccHHHHHHHHHcccHHHHHccHHHHHHHHHHHHHHccccEEEEccHHHHHHHHcccEEEEccccccccccccHHHHHcccccccHHHHHHHHHHHHHHHHHcccccEEEEEcccHHHHHHHHHcccccHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccHHHHHHHHHHccccEEEccccccHHHHHHHcccEEEEEccccEEEcccHHHHHHHHHHHHHHHccccEEEEccccccccccHHHHHHHHHHHHHHcccc //