[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : hemF
DDBJ      :hemF         coproporphyrinogen III oxidase
Swiss-Prot:HEM6_AGRT5   RecName: Full=Coproporphyrinogen-III oxidase, aerobic;         Short=Coproporphyrinogenase;         Short=Coprogen oxidase;         EC=1.3.3.3;

Homologs  Archaea  0/68 : Bacteria  434/915 : Eukaryota  180/199 : Viruses  0/175   --->[See Alignment]
d.248.1
:303 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   28->302 1tlbA PDBj 5e-51 44.0 %
:RPS:PDB   14->303 3ejoA PDBj 2e-94 40.2 %
:RPS:SCOP  12->267 1tk1A  d.248.1.1 * 1e-52 35.1 %
:HMM:SCOP  9->303 1tklA_ d.248.1.1 * 2e-113 49.3 %
:RPS:PFM   19->302 PF01218 * Coprogen_oxidas 2e-61 49.2 %
:HMM:PFM   21->302 PF01218 * Coprogen_oxidas 8e-99 48.1 262/296  
:BLT:SWISS 1->303 HEM6_AGRT5 e-177 100.0 %
:PROS 188->212|PS01021|COPROGEN_OXIDASE
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87989.1 GT:GENE hemF GT:PRODUCT coproporphyrinogen III oxidase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 2219983..2220894 GB:FROM 2219983 GB:TO 2220894 GB:DIRECTION + GB:GENE hemF GB:PRODUCT coproporphyrinogen III oxidase GB:PROTEIN_ID AAK87989.1 GB:DB_XREF GI:15157401 GB:GENE:GENE hemF LENGTH 303 SQ:AASEQ MERPILPKGLPEDIEDKKAVAQAWFQHLRDTIVASFETLEDELTGPLSDQEPGRFVQKDWLRDNGEGGGGKMSMMEGRVFEKVGVHTSTVYGEFSPEFRKQIPGAEEDPRFWASGLSLIAHPVNPNVPAVHMNTRMVVTTSHWFGGGADLTPVLGRRRTQQDPDTQLFHRAFEITCNRHPIADYPRYKSWCDEYFFLKHRDEPRGTGGIFFDWLHPDEEKGGWDANFTFVQDVGRAFNLVYPKIVRANFNQNWTEEDRDEQLIRRGRYVEFNLLYDRGTIFGLKTGGNVESILSSLPPVVRWP GT:EXON 1|1-303:0| SW:ID HEM6_AGRT5 SW:DE RecName: Full=Coproporphyrinogen-III oxidase, aerobic; Short=Coproporphyrinogenase; Short=Coprogen oxidase; EC=1.3.3.3; SW:GN Name=hemF; OrderedLocusNames=Atu2247; ORFNames=AGR_C_4089; SW:KW Complete proteome; Cytoplasm; Oxidoreductase; Porphyrin biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->303|HEM6_AGRT5|e-177|100.0|303/303| GO:SWS:NREP 4 GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016491|"GO:oxidoreductase activity"|Oxidoreductase| GO:SWS GO:0055114|"GO:oxidation reduction"|Oxidoreductase| GO:SWS GO:0006779|"GO:porphyrin biosynthetic process"|Porphyrin biosynthesis| PROS 188->212|PS01021|COPROGEN_OXIDASE|PDOC00783| SEG 65->77|geggggkmsmmeg| BL:PDB:NREP 1 BL:PDB:REP 28->302|1tlbA|5e-51|44.0|266/326| RP:PDB:NREP 1 RP:PDB:REP 14->303|3ejoA|2e-94|40.2|261/292| RP:PFM:NREP 1 RP:PFM:REP 19->302|PF01218|2e-61|49.2|264/294|Coprogen_oxidas| HM:PFM:NREP 1 HM:PFM:REP 21->302|PF01218|8e-99|48.1|262/296|Coprogen_oxidas| GO:PFM:NREP 3 GO:PFM GO:0004109|"GO:coproporphyrinogen oxidase activity"|PF01218|IPR001260| GO:PFM GO:0006779|"GO:porphyrin biosynthetic process"|PF01218|IPR001260| GO:PFM GO:0055114|"GO:oxidation reduction"|PF01218|IPR001260| RP:SCP:NREP 1 RP:SCP:REP 12->267|1tk1A|1e-52|35.1|211/219|d.248.1.1| HM:SCP:REP 9->303|1tklA_|2e-113|49.3|272/325|d.248.1.1|1/1|Coproporphyrinogen III oxidase| OP:NHOMO 693 OP:NHOMOORG 614 OP:PATTERN -------------------------------------------------------------------- -----------------------------------------------------------------------------------------------------111111111--------------1-----------111-------1111111111111111111112211111111111111----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--1111-----111111111111111111111111-1111111111111111111111111111111111111111111111111111-1-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-------111111------------------------11111----------------------------1111-1111111-1111111111111111111---1111------11111111111111111-111111111111111111111111111111111111111111111111-1111111111111111--1111111111111111---------------111111111111111111111111111111111111111---111111111111111111111111111-------------------------------------------------------1- 11--111-31--11111111111111111111111111111211111111111111111111111111111111111--111111111-23111121111111222-12--121111-11111111111151-111111-11111111-11-11-1112111131111212--231222U2123231121213232224 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 290 STR:RPRED 95.7 SQ:SECSTR #############cHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHTTcccccEEEEEEcTTccEEEEEEEEcccccEEEEEEEEEEEcccccccETccccccTcccEEEEEEEEEEEEEccTTccEEEEEEEEEEEEcEEEEEEEEEEcccccHHcccHHHHHHHHHHHHHHHGGGcTTHHHHHHHHHHHHcEEGGGTEEcccEEEEEEEEccEEccccHHHHHHHHHHHHHHHHHHHHHHHHHHTTccccHHHHHHHHHHHHHHHHHHHHTcHHHHHHHHTTccHHHHGGGcccccccc DISOP:02AL 1-17, 97-108| PSIPRED cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccEEEEcccccccccccEEEEEEcccEEEEEEEEEEEEEccccHHHHHHcccccccccEEEEEEEEEEEcccccccccccEEEEEEEcccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHccccccccccccccEEEEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHcccEEEEEEEEcccEEEEEcccccccEEEEccccccccc //