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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : hisS-1
DDBJ      :hisS-1       histidyl-tRNA synthetase
Swiss-Prot:SYH_AGRT5    RecName: Full=Histidyl-tRNA synthetase;         EC=6.1.1.21;AltName: Full=Histidine--tRNA ligase;         Short=HisRS;

Homologs  Archaea  67/68 : Bacteria  869/915 : Eukaryota  192/199 : Viruses  0/175   --->[See Alignment]
c.23.6c.51.1d.104.1
:507 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   44->453 1wu7B PDBj 1e-28 33.9 %
:RPS:PDB   13->493 1adjA PDBj 9e-35 22.5 %
:RPS:SCOP  32->363 1usyA  d.104.1.1 * 4e-47 16.1 %
:RPS:SCOP  349->449 1e1cB2  c.23.6.1 * 2e-20 14.1 %
:HMM:SCOP  12->376 1kmmA2 d.104.1.1 * 1.2e-70 34.0 %
:HMM:SCOP  379->493 1kmmA1 c.51.1.1 * 2.2e-17 42.7 %
:RPS:PFM   44->176 PF00587 * tRNA-synt_2b 3e-11 34.9 %
:RPS:PFM   398->459 PF03129 * HGTP_anticodon 1e-04 39.3 %
:HMM:PFM   31->179 PF00587 * tRNA-synt_2b 3.6e-18 21.2 146/173  
:HMM:PFM   385->465 PF03129 * HGTP_anticodon 8.8e-12 27.5 80/94  
:BLT:SWISS 1->507 SYH_AGRT5 0.0 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86485.1 GT:GENE hisS-1 GT:PRODUCT histidyl-tRNA synthetase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 670894..672417 GB:FROM 670894 GB:TO 672417 GB:DIRECTION + GB:GENE hisS-1 GB:PRODUCT histidyl-tRNA synthetase GB:PROTEIN_ID AAK86485.1 GB:DB_XREF GI:15155635 GB:GENE:GENE hisS-1 LENGTH 507 SQ:AASEQ MSEKAKKPQKLKARLPRGFVDRSAADIHATNEMVDKIRRVYELYGFDPIETPLFEYTDALGKFLPDSDRPNEGVFSLQDDDDQWMSLRYDLTAPLARHVAENFNEIQLPYRTYRAGYVFRNEKPGPGRFRQFMQFDADTVGAAGVQADAEMCMMMADTMEALGIARGDYVIRVNNRKVLDGVMEAIGLGGEDNAGRRLNVLRAIDKLDKFGPEGVKLLLGPGRKDESGDFTKGAGLGDEQIEKVLFFVGIKDYAASADDLAKLVAGTSKGEEGVDELNTIGALVSGAGYDATRIKIDPSVVRGLEYYTGPVYEAELTFDVTNEKGEKVVFGSVGGGGRYDGLVSRFMGQPVPATGFSIGVSRLMTALKNLGKLGQVKPLAPVLITVMDGDVESMGRYQRFTQALRAEGIRAEMYQGNWKKFGNQLKYADRLGSPIAIIQGGDERAEGVVQIKDLIEGKRLSGEIEDNASWREARVAQVSVPEAELVAKVREILEHQAEDVRRAAEGR GT:EXON 1|1-507:0| SW:ID SYH_AGRT5 SW:DE RecName: Full=Histidyl-tRNA synthetase; EC=6.1.1.21;AltName: Full=Histidine--tRNA ligase; Short=HisRS; SW:GN Name=hisS; OrderedLocusNames=Atu0676; ORFNames=AGR_C_1210; SW:KW Aminoacyl-tRNA synthetase; ATP-binding; Complete proteome; Cytoplasm;Ligase; Nucleotide-binding; Protein biosynthesis. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->507|SYH_AGRT5|0.0|100.0|507/507| GO:SWS:NREP 6 GO:SWS GO:0004812|"GO:aminoacyl-tRNA ligase activity"|Aminoacyl-tRNA synthetase| GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0005737|"GO:cytoplasm"|Cytoplasm| GO:SWS GO:0016874|"GO:ligase activity"|Ligase| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0006412|"GO:translation"|Protein biosynthesis| BL:PDB:NREP 1 BL:PDB:REP 44->453|1wu7B|1e-28|33.9|345/407| RP:PDB:NREP 1 RP:PDB:REP 13->493|1adjA|9e-35|22.5|414/420| RP:PFM:NREP 2 RP:PFM:REP 44->176|PF00587|3e-11|34.9|126/170|tRNA-synt_2b| RP:PFM:REP 398->459|PF03129|1e-04|39.3|61/91|HGTP_anticodon| HM:PFM:NREP 2 HM:PFM:REP 31->179|PF00587|3.6e-18|21.2|146/173|tRNA-synt_2b| HM:PFM:REP 385->465|PF03129|8.8e-12|27.5|80/94|HGTP_anticodon| GO:PFM:NREP 9 GO:PFM GO:0000166|"GO:nucleotide binding"|PF00587|IPR002314| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF00587|IPR002314| GO:PFM GO:0005524|"GO:ATP binding"|PF00587|IPR002314| GO:PFM GO:0005737|"GO:cytoplasm"|PF00587|IPR002314| GO:PFM GO:0006412|"GO:translation"|PF00587|IPR002314| GO:PFM GO:0006418|"GO:tRNA aminoacylation for protein translation"|PF00587|IPR002314| GO:PFM GO:0004812|"GO:aminoacyl-tRNA ligase activity"|PF03129|IPR004154| GO:PFM GO:0005524|"GO:ATP binding"|PF03129|IPR004154| GO:PFM GO:0006412|"GO:translation"|PF03129|IPR004154| RP:SCP:NREP 2 RP:SCP:REP 32->363|1usyA|4e-47|16.1|267/275|d.104.1.1| RP:SCP:REP 349->449|1e1cB2|2e-20|14.1|99/163|c.23.6.1| HM:SCP:REP 12->376|1kmmA2|1.2e-70|34.0|321/322|d.104.1.1|1/1|Class II aaRS and biotin synthetases| HM:SCP:REP 379->493|1kmmA1|2.2e-17|42.7|96/99|c.51.1.1|1/1|Class II aaRS ABD-related| OP:NHOMO 1416 OP:NHOMOORG 1128 OP:PATTERN 111111111111111111111111111111111111111111111111111111111111111111-1 111111111111111-111-11--111111111111111111111111111111111111111111111-111111111112211221111111111--111111111111111111111111111111111111122212222221121221112211111111211112--11---1-11-11111-111223333332313333333222123322221211111111331111111111111111111111111111111112211111111111111111111111111111111111111111111111111111111312211111121122122111131211222211222122212112111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112-121111111111111111111111111111111111-11111111111111111111111111111111121111111111111111111111121111111111111111111111111111222122212111111111--11------11111111111111111111111111111111111111111111111-11112--1---11111111111111111-1111111111111111111111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111-11111111--11111111-11111111111111111111111111111111111111111111111111111111111-111-1111-11----111--1111111111111111 1111221-311111111121111111111-111111111111111111111211221211111111111111111111111-111111-12111111111111222112122112152222-3222222EV2-26E2222322221222222222313313311111221412111-22P2122222422222233222 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 494 STR:RPRED 97.4 SQ:SECSTR cTccccHHHHHTccccTTcccccHHHHHHHHHHHHHHHHHHHHTTcEEcccccEEEHHHHHHHHcTcHHHHHcccEEEcTTccEEEEccccHHHHHHHHHHTGGGccccEEEEEEEEEEcccccccccccEEEEEEEEEEccccHHHHHHHHHHHHHHHHHTTccccccEEEEEEcccHHHHHHEEEcccccETTcccEEEEHHHHHHHHHGGGGGGccHHHHHHTTccGGGGTTcccHHHHHHHHHHHHHHHTGGGccccEEEGGccHHHHHTcccGGGGccHHHHHHHHHHHHHHHHTTccEEEcccccccccccccEEEEccccccccEEEEEEEcTTHHHHTTcccccEEEEEEEHHHHHHHHHHccTTccccccccccEEEEEccHHHHHHHHHHHHHHTTTccEEEccccccccHHHHHHHHHHTTccEEEEEcHHHHHHTEEEEEETTTccGGTEEccHHHHHTTHHHHEEEEETTHHHHHHHHHHc############# DISOP:02AL 1-11, 505-507| PSIPRED ccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEcccccccHHHHHHHccccccccccEEEEEEccccEEEEccccHHHHHHHHHHHHHcccccEEEEEEEEEEEcccccccccccEEEEEEEEEccccHHHHHHHHHHHHHHHHHccccccccEEcHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHccccHHHHHHHHHHHcccccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHccccccEEEEccHHcccccccccEEEEEEEEccccccccccccccEEEEcccHHHHHHHHccccccEEEEEEcHHHHHHHHHHHcccccccccccEEEEEEcccHHHHHHHHHHHHHHHHccccEEEEccccccHHHHHHHHHHccccEEEEEcHHHHHccEEEEEEcccccEEEEcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHccc //