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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : hrcA
DDBJ      :hrcA         heat-inducible transcription repressor
Swiss-Prot:HRCA_RHIRD   RecName: Full=Heat-inducible transcription repressor hrcA;

Homologs  Archaea  0/68 : Bacteria  496/915 : Eukaryota  1/199 : Viruses  0/175   --->[See Alignment]
a.4.5d.110.2
:363 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->100 1stzB PDBj 4e-11 34.9 %
:RPS:SCOP  15->87 1hqcA1  a.4.5.11 * 4e-07 22.4 %
:RPS:SCOP  115->358 1stzA2  d.110.2.3 * 1e-49 19.2 %
:HMM:SCOP  14->100 1stzA1 a.4.5.51 * 3.4e-20 41.4 %
:HMM:SCOP  84->363 1stzA2 d.110.2.3 * 1.9e-50 37.9 %
:RPS:PFM   14->89 PF03444 * DUF293 2e-10 47.3 %
:RPS:PFM   119->345 PF01628 * HrcA 2e-32 44.3 %
:HMM:PFM   119->345 PF01628 * HrcA 9e-65 40.8 223/224  
:HMM:PFM   17->71 PF03444 * DUF293 9.3e-05 24.5 53/79  
:BLT:SWISS 1->363 HRCA_RHIRD 0.0 100.0 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86145.1 GT:GENE hrcA GT:PRODUCT heat-inducible transcription repressor GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 321899..322990 GB:FROM 321899 GB:TO 322990 GB:DIRECTION + GB:GENE hrcA GB:PRODUCT heat-inducible transcription repressor GB:PROTEIN_ID AAK86145.1 GB:DB_XREF GI:15155234 GB:GENE:GENE hrcA LENGTH 363 SQ:AASEQ MGFSAPLSKDQASLLDERSREIFRRIVEGYLDTGEPLGSRSLSRLLPMSLSPASVRNVMSDLEELGLIYSPHISAGRLPTQTGLRFFVDAFMQVGDLPADERANIDRQIGPVAGHEQSLEGLLTEASRMLSGMSRGAGLVLTAKNDVILKHVEFIRLEPTKALAVLVGDHNQVENRIIELPAGISSSQLTEAANFINAHLSGQTLQELRGQFQTQRTELQSELGMLAQDLVERGLAIWAGDNEEGKLGRLIVRGRSNLLEGLAGEEDIDRVRMLFDDLERKENLIEILNLAESGSGVRIFIGSENKLFSLSGSSLIVAPYRDEENRVVGAVGVIGPTRLNYARIVPMVDYTAQIMARLSRKQR GT:EXON 1|1-363:0| SW:ID HRCA_RHIRD SW:DE RecName: Full=Heat-inducible transcription repressor hrcA; SW:GN Name=hrcA; SW:KW Repressor; Stress response; Transcription; Transcription regulation. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->363|HRCA_RHIRD|0.0|100.0|363/363| GO:SWS:NREP 3 GO:SWS GO:0006950|"GO:response to stress"|Stress response| GO:SWS GO:0006350|"GO:transcription"|Transcription| GO:SWS GO:0045449|"GO:regulation of transcription"|Transcription regulation| SEG 36->52|plgsrslsrllpmslsp| BL:PDB:NREP 1 BL:PDB:REP 15->100|1stzB|4e-11|34.9|86/311| RP:PFM:NREP 2 RP:PFM:REP 14->89|PF03444|2e-10|47.3|74/76|DUF293| RP:PFM:REP 119->345|PF01628|2e-32|44.3|219/224|HrcA| HM:PFM:NREP 2 HM:PFM:REP 119->345|PF01628|9e-65|40.8|223/224|HrcA| HM:PFM:REP 17->71|PF03444|9.3e-05|24.5|53/79|DUF293| GO:PFM:NREP 4 GO:PFM GO:0003677|"GO:DNA binding"|PF03444|IPR005104| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF03444|IPR005104| GO:PFM GO:0003677|"GO:DNA binding"|PF01628|IPR002571| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF01628|IPR002571| RP:SCP:NREP 2 RP:SCP:REP 15->87|1hqcA1|4e-07|22.4|67/76|a.4.5.11| RP:SCP:REP 115->358|1stzA2|1e-49|19.2|219/236|d.110.2.3| HM:SCP:REP 14->100|1stzA1|3.4e-20|41.4|87/87|a.4.5.51|1/1|"Winged helix" DNA-binding domain| HM:SCP:REP 84->363|1stzA2|1.9e-50|37.9|235/236|d.110.2.3|1/1|GAF domain-like| OP:NHOMO 499 OP:NHOMOORG 497 OP:PATTERN -------------------------------------------------------------------- 11111111111111-11----1---------1------1-1111111111-1111111--111111111111111111-1111-------------------------1-1111111-111111-11111111111111111111111111111111--11--11111111-1-----1---------111111111111111111111111111111111111111111111111111111111111111-1111111111-111111111111-111---1---1--11111111111-------------111---1111111111111111111111111111111-1111121111111111111-1111-1111-1111111111111111111111111111-11111111111-11111111111111-1111111111111111111111111111------------------------------1111111111111111111111111111111-1111111111111111111111111111111-------111111-----111-1-111-111111111111111-1-------------------------11---------1-----------------------1111--------------------------------------------------------------------------------------------1---------11--------------------------------------------------------1--------------11111111111111----111111----------1-11-1--1--------1-1--1---11-1111--1--- -----------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 214 STR:RPRED 59.0 SQ:SECSTR ##############ccHHHHHHHHHHHHHHHHHcccccHHHHHHHccccccHHHHHHHHHHHHHTTcEEccccccccEEcHHHHHHHHHHHHHcccccccccHHHHTccTTcccHHH####HHHHHHHHHHHHHTcEEEEEcccGGccccEEEEEEccccEEEEEEEETTEEEEEEEEEccccccHHHHHHHHHHH###HTTccHHHHHTccGGGGccHHHHHTcccccEEEEcH################################################################################################################################ DISOP:02AL 1-13, 98-110, 112-113, 360-363| PSIPRED cccccccccHHHHccHHHHHHHHHHHHHHHHHccccccHHHHHHHcccccccHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccEEEEEccccccEEEEEEEEEEcccEEEEEEEccccEEEEEEEEccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEHHHHHHHcccHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHcccccEEEEccccccccccccEEEEEEEEccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHccc //