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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : hrpB
DDBJ      :hrpB         helicase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  473/915 : Eukaryota  198/199 : Viruses  1/175   --->[See Alignment]
b.121.1c.37.1c.92.1
:828 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   216->349 2kbfA PDBj 4e-05 34.2 %
:RPS:PDB   23->170 3b6eA PDBj 2e-09 16.2 %
:RPS:PDB   159->440 1ak1A PDBj 1e-42 10.0 %
:RPS:SCOP  7->130 1pgsA2  b.121.1.1 * 2e-08 9.6 %
:RPS:SCOP  172->466 1hrkA  c.92.1.1 * 3e-35 10.0 %
:HMM:SCOP  24->359 2bmfA2 c.37.1.14 * 3.4e-55 31.4 %
:RPS:PFM   257->340 PF00271 * Helicase_C 2e-05 42.4 %
:RPS:PFM   401->459 PF04408 * HA2 3e-05 39.0 %
:RPS:PFM   683->814 PF08482 * HrpB_C 1e-35 52.3 %
:HMM:PFM   683->814 PF08482 * HrpB_C 2.7e-50 49.2 132/133  
:HMM:PFM   253->339 PF00271 * Helicase_C 2.3e-16 36.2 69/78  
:HMM:PFM   401->488 PF04408 * HA2 2.1e-15 37.0 73/101  
:HMM:PFM   28->172 PF00270 * DEAD 1.4e-12 22.5 142/167  
:BLT:SWISS 12->824 HRPB_ECOLI e-148 41.8 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK85876.2 GT:GENE hrpB GT:PRODUCT helicase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(53592..56078) GB:FROM 53592 GB:TO 56078 GB:DIRECTION - GB:GENE hrpB GB:PRODUCT helicase GB:PROTEIN_ID AAK85876.2 GB:DB_XREF GI:159139479 GB:GENE:GENE hrpB LENGTH 828 SQ:AASEQ MTRTPVPIKTELPELPVSAVLGDIAQVLAAKKRAVLSAPPGAGKTTLVPLRLLHEDWRGDGKIILLEPRRLAARAAAGRMAELLRENVGETVGYRMRLDNRVSSKTRIEVVTEGVFARMVLDDPELSGVSTVIFDEFHERSLDGDFGLALALDVQAGLREDLRILVMSATLDVERIGALMGDAPVIQSLGRTFPIDIRYEERWQGIHVDEKVAKAITEAHASETGSILAFLPGQAEITRTASRLEGRFPDDTDIIPLYGNLSQKEQDAAIKPAPGGRRKIVLATSIAETSITIDGVRVVIDSGLQRLPVFEPATGITRLETVRVSRASADQRAGRAGRTEPGIAIRLWHQGQTAALNAFTPPQILASDLSGLALDLAHWGVHDPSALAFLDAPPEAALKESVALLKNLGALDNSGGLTRQGHLMRGLSLPPRLAAMVIASAEEGAGKKAAMLAVMLTEQGLGGNDIDLDERLRRFFSERSERAQAARKLASRLLDAIGDKTAKAETPSEVGALLLHAYPDRIALQRGARGRYVMANGRGAELAETERLAASKMLVVADITGRAAQPRVLAAAAIERADIEERMPHLIVQQEQLLFDKASGQARARKVTRLGAIILDETPLPRPDGEQAARALANGVREFGLDILPFSKETLQLRDRIGFLNASIGDPWPDVSDAALLARLEEWFVPFQNGARSLQDIRPGSLSEGILSLVPHEVARDLGRLAPTHFEAPTGQRHPIRYDASEPTLSIRVQELFGLKAHPAIAQGRLPLLLELTSPAHRPIQTTRDLPGFWTGSWKDVRADMRGRYPRHPWPEDPASALPTSRAKPRGT GT:EXON 1|1-828:0| BL:SWS:NREP 1 BL:SWS:REP 12->824|HRPB_ECOLI|e-148|41.8|800/809| SEG 65->86|lleprrlaaraaagrmaellre| SEG 142->153|ldgdfglalald| SEG 365->377|lasdlsglaldla| SEG 441->450|aeegagkkaa| SEG 470->482|erlrrffserser| SEG 563->582|aaqprvlaaaaieradieer| BL:PDB:NREP 1 BL:PDB:REP 216->349|2kbfA|4e-05|34.2|117/187| RP:PDB:NREP 2 RP:PDB:REP 23->170|3b6eA|2e-09|16.2|148/182| RP:PDB:REP 159->440|1ak1A|1e-42|10.0|281/308| RP:PFM:NREP 3 RP:PFM:REP 257->340|PF00271|2e-05|42.4|66/76|Helicase_C| RP:PFM:REP 401->459|PF04408|3e-05|39.0|59/97|HA2| RP:PFM:REP 683->814|PF08482|1e-35|52.3|132/133|HrpB_C| HM:PFM:NREP 4 HM:PFM:REP 683->814|PF08482|2.7e-50|49.2|132/133|HrpB_C| HM:PFM:REP 253->339|PF00271|2.3e-16|36.2|69/78|Helicase_C| HM:PFM:REP 401->488|PF04408|2.1e-15|37.0|73/101|HA2| HM:PFM:REP 28->172|PF00270|1.4e-12|22.5|142/167|DEAD| GO:PFM:NREP 4 GO:PFM GO:0003676|"GO:nucleic acid binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF00271|IPR001650| GO:PFM GO:0005524|"GO:ATP binding"|PF00271|IPR001650| GO:PFM GO:0004386|"GO:helicase activity"|PF04408|IPR007502| RP:SCP:NREP 2 RP:SCP:REP 7->130|1pgsA2|2e-08|9.6|114/174|b.121.1.1| RP:SCP:REP 172->466|1hrkA|3e-35|10.0|290/359|c.92.1.1| HM:SCP:REP 24->359|2bmfA2|3.4e-55|31.4|299/0|c.37.1.14|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 3336 OP:NHOMOORG 672 OP:PATTERN -------------------------------------------------------------------- 1-1-2222222212111----1--11------1-1-1111-2122121111-222221--221222222211111111----------------------------2-1------------------------------------------------111111---------1-----1----111---------------------------------------------11-------------------------------------------------------------------------------------------------------------------------1------------------1-21111-----1-11111111111-1-2--11-11-1111111111--1111111111111111-11111111111111111111111111------------------------------11111111111111111111111111111111111111-1111111111111111111111111111111111111112121111--111-11111111111112211------------------------1--222222222222222222222222223233--11222------22222222222222222-2222222222222122222222222222222222222222222222122221-222222212222--11---------12214111111-1111111111111111112222222222224224422111111-1122332221223333322222222222222--2-11----1111111111-------------------------------------22 57579891MAB5A6D779899998599999989AA99999799999AA879B9A89988977777777277577477477767778A9-BH97A99AAA87B99994CN4MLTIOJOEDFCGGETPETAr*I6TPcCCFFKDHJIBHDDBHBESDGIHGEVW9C9CBFDFlEBEA57BJ*FEFBCDBDJ9LH9A6CCCC --------------------------------------------------------------------------------------------------------------------------------------------------------------------------2---- STR:NPRED 492 STR:RPRED 59.4 SQ:SECSTR cHHHHHTHHHHHTTHHHHHHHHHHHHHHcccEEEEEEccTTccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHEEcccccTTEEccEEEHHHHHHHHEcEEEEccccEEEEcTTccEEEEEcHHHHHccccccccTTccccccccccHHHcEEEEEEEEEcGGGHHHHHHHHTTTcccHcHHHHHHHHHHHHHTTccHHHHHHHHHHHHHHcccEEEEEEEEEcccccHHHHHHHHHHTTccEEEEEEccccccTTTHHHHHHHHHHHHHHEEEccccTTcHHHHHHHHHHHHHHHHHccHHHHHcEEEEEEEEcccGGGGGGTccHHHHHHHHHHHHHHHHTcccEEEEEEcccccccccccccHHHHHHHHHHHHcccEEEEEcTTcccccHHHHTTTTTHHHHHHHTcEEEcccccTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTcccTccTTccHHHHHHHHHHHHHHHHHHHTT################################################################################################################################################################################################################################################################################################################################################ DISOP:02AL 1-3,463-486,821-829| PSIPRED ccccccHHHHHHHHccHHHHHHHHHHHHHHcccEEEEccccccHHHHHHHHHHHccccccccEEEEcccHHHHHHHHHHHHHHHccccccccEEEcccccccccccEEEEcccHHHHHHHHcccccccEEEEEEEccccccHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHcccccEEEEEccccccccEEEEEccHHHHHHHHHHHHHHHcccccccEEEEcccHHHHHHHHHHHHHccccccEEEEEcccccHHHHHHHHcccccccEEEEEEccHHHHccccccEEEEEccccccccccccccccEEEEEEEccHHHHHHHHHHHccccccEEEEcccHHHHHHccccccHHHHHccHHHHHHHHHHcccccHHHccccccccHHHHHHHHHHHHHcccccccccccHHHHHHHHccccHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHcccHHHHHHccccccEEEEEccEEEEEccccccccccEEEEEEccccccEEEEEEEccccHHHHHHHHHHHHcEEEccEEcHHHHHHHHEEEEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHcccccHHHHccccHHHHHHHHccHHHHHHHHHHcccEEEcccccEEEEEEcccccEEEEEHHHHHccccccEEccccEEEEEEEEccccccHHHHccHHHHHcccHHHHHHHHccccccccccccccccccHHccccccc //