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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : icdA
DDBJ      :icdA         isocitrate dehydrogenase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  168/915 : Eukaryota  190/199 : Viruses  0/175   --->[See Alignment]
c.77.1
:404 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   3->402 1lwdA PDBj e-162 67.5 %
:RPS:PDB   3->404 2cmjA PDBj e-106 67.6 %
:RPS:SCOP  1->403 1lwdA  c.77.1.1 * e-112 66.5 %
:HMM:SCOP  1->405 1lwdA_ c.77.1.1 * 2.9e-150 44.4 %
:RPS:PFM   15->394 PF00180 * Iso_dh 2e-20 36.3 %
:HMM:PFM   5->393 PF00180 * Iso_dh 3.5e-79 27.5 342/347  
:BLT:SWISS 1->403 IDH_SPHYA e-177 73.4 %
:PROS 269->288|PS00470|IDH_IMDH

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87636.2 GT:GENE icdA GT:PRODUCT isocitrate dehydrogenase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1848284..1849498 GB:FROM 1848284 GB:TO 1849498 GB:DIRECTION + GB:GENE icdA GB:PRODUCT isocitrate dehydrogenase GB:PROTEIN_ID AAK87636.2 GB:DB_XREF GI:159140235 GB:GENE:GENE icdA LENGTH 404 SQ:AASEQ MAKIKVANPVVDLDGDEMTRIIWQLIKDKLILPYLDLDIEYYDLSVENRDATNDQVTVDAAHAIKKHGVGIKCATITPDEQRVEEFGLKQMWKSPNGTIRNILGGVIFREPIICKNVPRLVPGWTKPIVVGRHAFGDQYKATDFKFPGKGKLTIKFVGEDGTVIEKDVFDAPSAGVALAMYNLDESIREFARASMMYGLMRKWPVYLSTKNTILKAYDGRFKDIFEEVYQTEFKAKFDEVGITYEHRLIDDMVASALKWSGGYVWACKNYDGDVQSDTVAQGFGSLGLMTSVLLSPDGRTVEAEAAHGTVTRHYRQHQKGQETSTNSIASIFAWTRGLAHRAKLDDNAELAKFATTLETVCVDTVESGFMTKDLALLIGPDQPWLSTTAFLDKIDENLKTAMAA GT:EXON 1|1-404:0| BL:SWS:NREP 1 BL:SWS:REP 1->403|IDH_SPHYA|e-177|73.4|403/406| PROS 269->288|PS00470|IDH_IMDH|PDOC00389| BL:PDB:NREP 1 BL:PDB:REP 3->402|1lwdA|e-162|67.5|400/413| RP:PDB:NREP 1 RP:PDB:REP 3->404|2cmjA|e-106|67.6|401/410| RP:PFM:NREP 1 RP:PFM:REP 15->394|PF00180|2e-20|36.3|311/338|Iso_dh| HM:PFM:NREP 1 HM:PFM:REP 5->393|PF00180|3.5e-79|27.5|342/347|Iso_dh| GO:PFM:NREP 4 GO:PFM GO:0000287|"GO:magnesium ion binding"|PF00180|IPR001804| GO:PFM GO:0016616|"GO:oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor"|PF00180|IPR001804| GO:PFM GO:0051287|"GO:NAD or NADH binding"|PF00180|IPR001804| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00180|IPR001804| RP:SCP:NREP 1 RP:SCP:REP 1->403|1lwdA|e-112|66.5|403/413|c.77.1.1| HM:SCP:REP 1->405|1lwdA_|2.9e-150|44.4|405/413|c.77.1.1|1/1|Isocitrate/Isopropylmalate dehydrogenase-like| OP:NHOMO 559 OP:NHOMOORG 358 OP:PATTERN -------------------------------------------------------------------- ----1----------1111-1---1-11111-----11111---11--1111-----1--11--111---11111111--111-------------------1--111------------------------------------1---------------------1---------------------11-1---------------------------------------------------------------------------------------------------------------------------------------1-------1-11-11------1--111--1111------111----1--111111111211111111111111111111111-1111111111111111-111111111111-1122221--11111111111-11-1-----------------------------11111------------------------------------------------------------------------1---1-----------------1-------1------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------111111-----------------------------------------1-111--- 12--22--312-1111111111111111111111111111111111111111111111111112222212332222323322222211-12511112111111212-3-14383333222223243352BK2-224121242223123212222212222232222294262222111172121124451321122211 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 404 STR:RPRED 100.0 SQ:SECSTR cccEEcEEEEEEEEccHHHHHHHHHHHHHHTTTTEEEEEEEEEccHHHHHHTTTHHHHHHHHHHHHHcEEEEcccccccHHHHHHHTcccccccHHHHHHHHHccEEEEEEcccTTcccccTTccccEEEEEEcccGGGGcEEEEEcccEEEEEEEccccccEEEEEEEEccccEEEEEccccHHHHHHHHHHHHHHHHHHTccEEEEEcTTTcTTHHHHHHHHHHHHHHHHTHHHHHHTTccEEEEEHHHHHHHHHHccccEEEEEcHHHHHHHHHHHHHHHTcTTcEEEEEEcTTcccEEEEccccccHHHHHHHHTTcccccccHHHHHHHHHHHHHHHHHHTcHHHHHHHHHHHHHHHHHHHTTcccHHHHHHHHcGGGcccHHHHHHHHHHHHHHHHHH DISOP:02AL 1-3,404-405| PSIPRED cccEEEcccEEEEccccccHHHHHHHHHHHcccccccEEEEEEccccccccccccccHHHHHHHHHccEEEEccccccccHHHHccccccccccHHHHHHHHcccEEEEEEEEEcccccccccccccEEEEEEcccccccccEEEEcccccEEEEEEccccEEEEEEEEccccccEEEEEEEccHHHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHccHHHHHHHHHccccccEEEEEccccccHHHcccccccccHHHcHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccHHHHHHHHHHHHHHHHcc //