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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : lasT
DDBJ      :lasT         tRNA/rRNA methyltransferase
Swiss-Prot:             

Homologs  Archaea  57/68 : Bacteria  474/915 : Eukaryota  7/199 : Viruses  0/175   --->[See Alignment]
c.116.1
:277 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   13->244 3ilkB PDBj 4e-21 32.7 %
:RPS:PDB   17->170 3dcmX PDBj 2e-27 14.3 %
:RPS:SCOP  17->170 1gz0A1  c.116.1.1 * 4e-27 20.3 %
:HMM:SCOP  15->173 1v2xA_ c.116.1.1 * 3.6e-32 32.2 %
:RPS:PFM   17->166 PF00588 * SpoU_methylase 9e-11 33.8 %
:HMM:PFM   16->166 PF00588 * SpoU_methylase 2.6e-34 38.4 138/142  
:BLT:SWISS 17->250 TRMJ_ERWCT 2e-27 33.5 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87634.2 GT:GENE lasT GT:PRODUCT tRNA/rRNA methyltransferase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1846590..1847423) GB:FROM 1846590 GB:TO 1847423 GB:DIRECTION - GB:GENE lasT GB:PRODUCT tRNA/rRNA methyltransferase GB:PROTEIN_ID AAK87634.2 GB:DB_XREF GI:159140233 GB:GENE:GENE lasT LENGTH 277 SQ:AASEQ MAGTNSELELVAEGPAIILVEPQLGENIGMVARAMANFGLSELRLVNPRDGWPSEKARAAASKADHVIDGTRVFETLEEAIKDLNFVYATTARERYGFKPVRAPVTAADTLRTKFKAGEKTGILFGRERWGLTNEEVALADEIVTFPVNPAFASLNIAQAVLLMSYEWMKSGMDDLGETLFQPIEQRPSTKEQVFGLFEHIEEALDARGYFHPAEKKPKMVDNLRAVLSRRGFSEQEISVFRGVIRSLDRFPRQWPKKTGRAAGPLAEGAGENAEDE GT:EXON 1|1-277:0| BL:SWS:NREP 1 BL:SWS:REP 17->250|TRMJ_ERWCT|2e-27|33.5|230/241| BL:PDB:NREP 1 BL:PDB:REP 13->244|3ilkB|4e-21|32.7|214/226| RP:PDB:NREP 1 RP:PDB:REP 17->170|3dcmX|2e-27|14.3|154/188| RP:PFM:NREP 1 RP:PFM:REP 17->166|PF00588|9e-11|33.8|139/143|SpoU_methylase| HM:PFM:NREP 1 HM:PFM:REP 16->166|PF00588|2.6e-34|38.4|138/142|SpoU_methylase| GO:PFM:NREP 3 GO:PFM GO:0003723|"GO:RNA binding"|PF00588|IPR001537| GO:PFM GO:0006396|"GO:RNA processing"|PF00588|IPR001537| GO:PFM GO:0008173|"GO:RNA methyltransferase activity"|PF00588|IPR001537| RP:SCP:NREP 1 RP:SCP:REP 17->170|1gz0A1|4e-27|20.3|143/166|c.116.1.1| HM:SCP:REP 15->173|1v2xA_|3.6e-32|32.2|143/191|c.116.1.1|1/1|alpha/beta knot| OP:NHOMO 623 OP:NHOMOORG 538 OP:PATTERN 11111111111111111------1111111111111111111111111111111---111111111-- 111-------------------------------------------------------------------------------------------------------------------------------------111-------211111111111111111111111111111111111111111--1----------------------------------------------------------------------------------------------------------------------------------------------------------------1---------------------11-111111111111111111111111111111111-1111111111111111111111111111111111111111111111111111111------------111111111-11-----11111111111111111111111111111111111111111111111111111111111111111111111111111-121-111111111-11111112122222-11-------------------------11221121111112111111111111111111---1111------22222212222221222-2222222222222222222222221112222222222222222222222221-111111111111--1111111111112122111111111-111111111111111111111111111111111111111111121111111111111111111111111111111---------------1---------------------------------------- ------------------------------------------------------------------------------------------------------------1-------------------------------------------------------------------22-2-22-1-------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 227 STR:RPRED 81.9 SQ:SECSTR ############GGEEcEEcccccHHHHHHHHHHHHHTTccEEEEEcccHHHHTcGGGGTccccHHHHTTEEEEccHHHHHHHHHHHHccccEEEEcccccccccccHHHHHHHHHHccccEEEEEccTTcccHHHHTTccEcccTTTTcccccccHHHHHHHHHHHHTTHHHHHHHHHHTTccccccccHHHHHHHHHHHHHHHHHTTcc#####ccHHHHHHHHHHHHHTccHHHHHHHHHH################################# DISOP:02AL 1-6,172-191,251-278| PSIPRED ccccccccHHHHcccEEEEEccccccHHHHHHHHHHHccccEEEEEccccccccHHHHHHHcccEEEccEEEEEccHHHHHHHccEEEEEEccccccccEEEccccHHHHHHHHHcccccEEEEEccccccccHHHHHHcccEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccHHHccccccccccc //