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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : ligE
DDBJ      :ligE         lignin degradation protein
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  35/915 : Eukaryota  17/199 : Viruses  0/175   --->[See Alignment]
a.45.1c.47.1
:231 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   28->88 1e6bA PDBj 5e-10 49.2 %
:RPS:PDB   18->220 1byeA PDBj 1e-14 15.1 %
:RPS:SCOP  16->89 1jlvA2  c.47.1.5 * 3e-12 23.0 %
:RPS:SCOP  132->215 1z9hA1  a.45.1.1 * 9e-11 23.1 %
:HMM:SCOP  3->111 1z9hA2 c.47.1.5 * 3.6e-14 32.4 %
:HMM:SCOP  95->220 1gwcA1 a.45.1.1 * 1.1e-06 24.2 %
:HMM:PFM   22->80 PF02798 * GST_N 3.2e-06 31.0 58/75  
:HMM:PFM   159->217 PF00043 * GST_C 2.7e-06 22.0 59/95  
:BLT:SWISS 3->226 LIGE_PSEPA 2e-36 37.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86925.2 GT:GENE ligE GT:PRODUCT lignin degradation protein GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1112597..1113292 GB:FROM 1112597 GB:TO 1113292 GB:DIRECTION + GB:GENE ligE GB:PRODUCT lignin degradation protein GB:PROTEIN_ID AAK86925.2 GB:DB_XREF GI:159139921 GB:GENE:GENE ligE LENGTH 231 SQ:AASEQ MTNSRTLYSLCGSDISRPFSPHCWKTVLSLAHKGLDFEERPLPFTVIPTVEDGFSKTVPILRDGDQLVSDSFEIALYLDEAYPERPSLFDGDGGRSMARFVESWSQTVLHPVITRIAVLDIHNMLNEPDRVYFRDSRTKALGRPLEDVVANREAEIAAFPALLAPIRRMLSFQPFIGGASPLFADYIVFGALQWARITSGADLFADNDPVRDWFEGCLDLYDARGRSVTAA GT:EXON 1|1-231:0| BL:SWS:NREP 1 BL:SWS:REP 3->226|LIGE_PSEPA|2e-36|37.2|223/281| BL:PDB:NREP 1 BL:PDB:REP 28->88|1e6bA|5e-10|49.2|61/194| RP:PDB:NREP 1 RP:PDB:REP 18->220|1byeA|1e-14|15.1|186/213| HM:PFM:NREP 2 HM:PFM:REP 22->80|PF02798|3.2e-06|31.0|58/75|GST_N| HM:PFM:REP 159->217|PF00043|2.7e-06|22.0|59/95|GST_C| RP:SCP:NREP 2 RP:SCP:REP 16->89|1jlvA2|3e-12|23.0|74/84|c.47.1.5| RP:SCP:REP 132->215|1z9hA1|9e-11|23.1|78/161|a.45.1.1| HM:SCP:REP 3->111|1z9hA2|3.6e-14|32.4|102/0|c.47.1.5|1/1|Thioredoxin-like| HM:SCP:REP 95->220|1gwcA1|1.1e-06|24.2|99/138|a.45.1.1|1/1|Glutathione S-transferase (GST), C-terminal domain| OP:NHOMO 75 OP:NHOMOORG 52 OP:PATTERN -------------------------------------------------------------------- --------------------------------------------------------------------------------------------------------------------------------------------------------------------------1----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------11111--111-11--------------1--1---11--111111111111------1---------------1--------------------------------------11------------------------------------------------------------------------------------------------------1-----------------------------------1---------------------------------------------------------------------------------------------------------------------------------------1--------------------------1------------------------------------------------------------------------------------------------------------------- ------------------------------1---------------------1-----------1------------------------345-2521-1-1--182-1----------------------------------------------------------------------------1-------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 223 STR:RPRED 96.5 SQ:SECSTR ccccEEEEEcccHHHHHcccccHHHHHHHHHHTTccEEcccccGGGTGGGcTTGGGTcccEEETTEEcccHHHHHHHHHHHHcGGGTTTTcHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTHHHHHcccccHHHTHHHHTTccccHHHHHHHHHHHHHHHHHHHHHHHHTTcccccccccccHHHHTTHHHHHHHHHcTTTTGGGGcHHHHHHHHHHTTccHH######## DISOP:02AL 1-1,228-232| PSIPRED ccccEEEEEEcccccccccccHHHHHHHHHHHcccccEEEEccccccHHHcccccccccEEEEccEEEEEHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEccccccHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccc //