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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : ligT
DDBJ      :ligT         2'-5' RNA ligase
Swiss-Prot:             

Homologs  Archaea  36/68 : Bacteria  175/915 : Eukaryota  0/199 : Viruses  0/175   --->[See Alignment]
d.61.1
:197 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   29->127 1vdxA PDBj 3e-09 29.6 %
:RPS:PDB   3->176 2d4gA PDBj 1e-26 20.4 %
:RPS:SCOP  2->179 1fsiA  d.61.1.1 * 2e-30 9.0 %
:HMM:SCOP  2->180 1iuhA_ d.61.1.2 * 5.4e-43 40.1 %
:RPS:PFM   9->79 PF02834 * 2_5_RNA_ligase 8e-06 40.8 %
:HMM:PFM   9->84 PF02834 * 2_5_RNA_ligase 1.7e-18 32.9 76/87  
:HMM:PFM   92->168 PF02834 * 2_5_RNA_ligase 1.2e-16 32.0 75/87  
:BLT:SWISS 29->176 Y768_AQUAE 4e-15 35.2 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK88399.2 GT:GENE ligT GT:PRODUCT 2'-5' RNA ligase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2660738..2661331) GB:FROM 2660738 GB:TO 2661331 GB:DIRECTION - GB:GENE ligT GB:PRODUCT 2'-5' RNA ligase GB:PROTEIN_ID AAK88399.2 GB:DB_XREF GI:159140580 GB:GENE:GENE ligT LENGTH 197 SQ:AASEQ MPRLFTALEIPRNAAMSLSLLRGGLPGARWIDVENYHITLRFIGDIDGRTADEVVDRLDRIERPEFQLNLTGIGSFGSKKPHSIWAGVSPSPEMHALQAEVERICQRIGLPPDPRKFMPHVTLARLRSSRVDDVVHYLSGRGNFRTSPFTVGRFVLMSSKESVGGGPYVVEEAFPLHEARSSSIFSSNDLHPAKSML GT:EXON 1|1-197:0| BL:SWS:NREP 1 BL:SWS:REP 29->176|Y768_AQUAE|4e-15|35.2|145/188| BL:PDB:NREP 1 BL:PDB:REP 29->127|1vdxA|3e-09|29.6|98/184| RP:PDB:NREP 1 RP:PDB:REP 3->176|2d4gA|1e-26|20.4|162/165| RP:PFM:NREP 1 RP:PFM:REP 9->79|PF02834|8e-06|40.8|71/86|2_5_RNA_ligase| HM:PFM:NREP 2 HM:PFM:REP 9->84|PF02834|1.7e-18|32.9|76/87|2_5_RNA_ligase| HM:PFM:REP 92->168|PF02834|1.2e-16|32.0|75/87|2_5_RNA_ligase| RP:SCP:NREP 1 RP:SCP:REP 2->179|1fsiA|2e-30|9.0|166/179|d.61.1.1| HM:SCP:REP 2->180|1iuhA_|5.4e-43|40.1|172/183|d.61.1.2|1/1|LigT-like| OP:NHOMO 211 OP:NHOMOORG 211 OP:PATTERN 11111--111111111111-1111-----1-------------11-1111--111--1-1--1---11 11--1-----------------------------------------------------------------1----------11111----------------------1---------------------------11111111-1------------------------------------------1---1-111111111111111-1----111111-1---------------------------------------------------------------------------------------------------------1111111-----------1-1------1111-111--1111-----1-1111-1111111111111111111111111111-11111111111-11111111111111111-1-1111-----------11111111--------------------------------11------------------------------1111---------------------------------------1--11---1-----111111111--1-1-11-------------------------------1---------------------1---------1--------1------------------------------------------------------------------------------------111--------------------------------------------------------------------------1--------------------------11-----------------------------------------1-1-1-1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 174 STR:RPRED 88.3 SQ:SECSTR ##EEEEEccccHHHHHHHHHHHHHH##cGGGGTccccccccccEEccGGGHHHHHHHHHHHHHccEEEEEEEEEcTTccTcccEEEEEcccHHHHHHHHHHHHTTcGGGccccccccccEEEEEcccEEcHHHHHHHHHHHTccccEEEEEcEEEEEEEEEEcTTccEEEEEEEEccc################### DISOP:02AL 179-195| PSIPRED ccEEEEEccccHHHHHHHHHHHHHccccccccHHHEEEEEEEcccccHHHHHHHHHHHHHHccccEEEEEEEEEEcccccccEEEEEccccHHHHHHHHHHHHHHHHcccccccccccccEEEEEEccccHHHHHHHHHHccccccccEEEEEEEEEEEEEcccccEEEEEEEEEccccccccccccccHHHHHHcc //