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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : lpxB
DDBJ      :lpxB         lipid A-disaccharide synthase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  549/915 : Eukaryota  9/199 : Viruses  0/175   --->[See Alignment]
c.87.1
:394 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:RPS:PDB   1->296 3beoA PDBj 5e-13 14.0 %
:HMM:SCOP  5->349 1f6dA_ c.87.1.3 * 1.8e-19 21.1 %
:RPS:PFM   7->333 PF02684 * LpxB 8e-56 42.7 %
:HMM:PFM   7->333 PF02684 * LpxB 4.9e-81 39.3 321/373  
:BLT:SWISS 7->387 LPXB_RHOPA 4e-73 43.6 %
:TM
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87178.1 GT:GENE lpxB GT:PRODUCT lipid A-disaccharide synthase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1380109..1381293 GB:FROM 1380109 GB:TO 1381293 GB:DIRECTION + GB:GENE lpxB GB:PRODUCT lipid A-disaccharide synthase GB:PROTEIN_ID AAK87178.1 GB:DB_XREF GI:15156452 GB:GENE:GENE lpxB LENGTH 394 SQ:AASEQ MTAALKVAVIAGEVSGDLLGADLIRSLKVRYAGSVELVGVGGEALEAQGLTSLFDYSELSIMGFTQVLKKLPKLIARINQTAAAIVAAKPDILLIIDSPDFTHRVAKKVRKQLPQLPVVNYVCPSVWAWKEYRATAMLSYVDHVLALLPFEPEAMRRLGGPPTTFVGHRLSVDPEVLAARQKRADRPLPEQGQPRTILLLPGSRSTETTRLMEPFQDAAKAFVERNGPTRFLLPTVPRQEHRIREMAAMWPDDIRPEIGIDSAFKWKAFAEADAAIAASGTVILELALAGVPTISVYKTDWIFTMLSKRVKTWTGALPNLIADYAIIPEYFNEVVRSGSMLRWAERLSSDTTERRAMLEGYALVQQRLHTDVPPGETGAAILLDVLKTKNSRSA GT:EXON 1|1-394:0| BL:SWS:NREP 1 BL:SWS:REP 7->387|LPXB_RHOPA|4e-73|43.6|376/393| TM:NTM 2 TM:REGION 4->26| TM:REGION 275->297| SEG 263->278|afkwkafaeadaaiaa| RP:PDB:NREP 1 RP:PDB:REP 1->296|3beoA|5e-13|14.0|293/375| RP:PFM:NREP 1 RP:PFM:REP 7->333|PF02684|8e-56|42.7|316/368|LpxB| HM:PFM:NREP 1 HM:PFM:REP 7->333|PF02684|4.9e-81|39.3|321/373|LpxB| GO:PFM:NREP 2 GO:PFM GO:0008915|"GO:lipid-A-disaccharide synthase activity"|PF02684|IPR003835| GO:PFM GO:0009245|"GO:lipid A biosynthetic process"|PF02684|IPR003835| HM:SCP:REP 5->349|1f6dA_|1.8e-19|21.1|336/0|c.87.1.3|1/1|UDP-Glycosyltransferase/glycogen phosphorylase| OP:NHOMO 568 OP:NHOMOORG 558 OP:PATTERN -------------------------------------------------------------------- 111--------------------------------------------------------------------------------111111111-1111--111111111-111111111111111111111111111----------1211111-11111111111111111111111111111-----111---------------------------------------------------------------------------------------------------------------------------------------------------------------------------1--------1-111111111111--1111111111111111111111-1111111111111111111111111111111111111111111111111111111------------1111111111111----1-----11111111111111111111111111111111111111111111111111111111111111111---11111111111--1111111111111111111-11111111111111111111111111111111111111111111111111111111111--11111------11111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111112222111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-111111----------------------------------------------111 ------------------------------------------------------------------------------------------------------------4----------------------------------------------------------------------------3111-11---1-1- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 339 STR:RPRED 86.0 SQ:SECSTR ccccEEEEEEEccHHHHHHHHHHHHHHTTcTTETEEEEEEEcccccHHHHHHHTccccEEcccccTTccHHHHHHHHHHHHHHHHHHHcccEEEEETTcHHHHHHHHHHHHHHTTccEEEEccTTccTTHHHHHHHHHHHccEEEEccHHHHHHHHHTTccGGGEEEcccHHHHHHHHHcccccccHHHHTTTcEEEEEEcccGGGTTHHHHHHHHHHHHHHHHcTTEEEEEEccccHHHHHHHHHHHTTcTTEEEEccccHHHHHHHHHTccEEEEccHHHHHHHHHHTccEEEc###############cccccccHHHHHHTcE###EEcTTcHHHHHHHHHHHHHcHHHHHHH##################################### DISOP:02AL 1-2, 186-188, 369-373, 390-394| PSIPRED cccccEEEEEEccccHHHHHHHHHHHHHHHccccEEEEEEccHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEEccccccHHHHHHHHHHcccccEEEEEcccEEEEccHHHHHHHHHHcHHHHcccccHHHHHccccccEEEEccccHHHHHHHcccHHHHHHHccccccccEEEEEccccHHHHHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHcccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEcccHHHHHHHHHHHccccccccHHHcccccHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccccccc //