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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : lpxC
DDBJ      :lpxC         UDP-3-0-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  554/915 : Eukaryota  17/199 : Viruses  0/175   --->[See Alignment]
d.14.1
:318 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   9->297 2vesC PDBj 3e-58 41.1 %
:RPS:PDB   24->154 2c5mB PDBj 1e-18 20.7 %
:RPS:SCOP  7->127 1p42A1  d.14.1.7 * 4e-42 31.3 %
:RPS:SCOP  135->284 1p42A2  d.14.1.7 * 2e-44 30.6 %
:HMM:SCOP  7->132 1p42A1 d.14.1.7 * 4.5e-36 45.0 %
:HMM:SCOP  140->285 2go3A2 d.14.1.7 * 3.5e-44 54.0 %
:RPS:PFM   9->284 PF03331 * LpxC 7e-71 48.9 %
:HMM:PFM   9->284 PF03331 * LpxC 1.3e-90 38.6 272/277  
:BLT:SWISS 8->293 LPXC_BRUSU 2e-87 60.4 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87835.2 GT:GENE lpxC GT:PRODUCT UDP-3-0-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2045892..2046848) GB:FROM 2045892 GB:TO 2046848 GB:DIRECTION - GB:GENE lpxC GB:PRODUCT UDP-3-0-(3-hydroxymyristoyl) N-acetylglucosamine deacetylase GB:PROTEIN_ID AAK87835.2 GB:DB_XREF GI:159140316 GB:GENE:GENE lpxC LENGTH 318 SQ:AASEQ MTIGLLGFQTTIAHAVQLKGIGVHSGNPVSMTFQPAEAGTGILFQRLHDNGSVTELKAVSANVGNTDLCTVLGRSLSQSVATIEHVMAAIYAMGLDNLIVEVDGPEVPIMDGSSAPFIEAIESVGIKNLGVKRRYIRVTKPVRIDSGASWAEFRPYDGTRFEVDIDFDTPLIGRQSWKGDLTAETFKNELSRARTFGFMRDVERLWAAGYALGSSLENSVVISDDNSVINMEGLRYAKDEFVRHKTLDAVGDLALAGAQFIGCYRSYRGGHKVNANALKALLSDPSAYEIVEAPAARNQVRAREFVAVNMPEFAPWSA GT:EXON 1|1-318:0| BL:SWS:NREP 1 BL:SWS:REP 8->293|LPXC_BRUSU|2e-87|60.4|283/286| SEG 247->258|ldavgdlalaga| BL:PDB:NREP 1 BL:PDB:REP 9->297|2vesC|3e-58|41.1|285/299| RP:PDB:NREP 1 RP:PDB:REP 24->154|2c5mB|1e-18|20.7|116/235| RP:PFM:NREP 1 RP:PFM:REP 9->284|PF03331|7e-71|48.9|272/276|LpxC| HM:PFM:NREP 1 HM:PFM:REP 9->284|PF03331|1.3e-90|38.6|272/277|LpxC| GO:PFM:NREP 2 GO:PFM GO:0008759|"GO:UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity"|PF03331|IPR004463| GO:PFM GO:0009245|"GO:lipid A biosynthetic process"|PF03331|IPR004463| RP:SCP:NREP 2 RP:SCP:REP 7->127|1p42A1|4e-42|31.3|115/120|d.14.1.7| RP:SCP:REP 135->284|1p42A2|2e-44|30.6|144/147|d.14.1.7| HM:SCP:REP 7->132|1p42A1|4.5e-36|45.0|120/120|d.14.1.7|1/1|Ribosomal protein S5 domain 2-like| HM:SCP:REP 140->285|2go3A2|3.5e-44|54.0|137/0|d.14.1.7|1/1|Ribosomal protein S5 domain 2-like| OP:NHOMO 604 OP:NHOMOORG 571 OP:PATTERN -------------------------------------------------------------------- 111--------------------------------------------------------------------------------11111111111111--111111111-111111111111111111111111111----------1111111111111111111111111111111111111-----111-----------------------------------------------------------------------------------------------------------------------------------------------------------------------1---1--------11111111111111--1111111111111111111111-1121111211111111111111111111111111111111111111111111111------------1111111111111----1-----11111122221222221111222222211111111121111111111111111111111111111---11111111111--1111112111121111111-11111111111111111111111111111111111111111111111111111111111--11111------11111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111111111111111111111211111111111111111111111111111111111111111111111----------------------------------------------111 ------------------------------------------------------------------------------------------------------------1------------------------------------------------------------------1--17111--1111-51--1111- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 290 STR:RPRED 91.2 SQ:SECSTR #####ccEEEEEcccEEEEEEcTGGTccccccccccEEEHHHHHHHHHHHHHHTcEEccGGcccccccTTTHHHH#TEHHHHHHTTTTccccccccEEEEEcccccccTTcccccHHHHHHHTHHHHccGGGEEEEEEEcccccEETcccccccccccEEEEEEcccccTTTTccEEEEEccHHHHHHHTTTcccEEEHHHHHHHHTTTccTTccGGGcEEEccccccccTTcccc#TTHHHHHHHHHHHHHHGGGccEEEEEEEEEcccHHHHHHHHHHHHHcGGGEEEEcccTTc##################### DISOP:02AL 1-1,318-319| PSIPRED cEEEEEcccHHHccEEEEEEEEcccccEEEEEEEEcccccEEEEEEEEccccccEEEccHHHHccccccEEEEcccccEEEEHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHcccEEccccccEEEEccEEEEEEccEEEEEEEccccEEEEEEEccccccccEEEEEEEcHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccEEEEEcccEEEccccccccccccHHHHHHHHHHHHHHHccccEEEEEEEcccHHHHHHHHHHHHccccccEEEEcccccccccccccEEEcccccccccc //