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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : lpxD
DDBJ      :lpxD         UDP glucosamine N-acyltransferase
Swiss-Prot:LPXD_AGRT5   RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase;         EC=2.3.1.-;

Homologs  Archaea  2/68 : Bacteria  580/915 : Eukaryota  12/199 : Viruses  0/175   --->[See Alignment]
b.81.1
:355 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   15->345 2iu8C PDBj 1e-45 38.3 %
:RPS:PDB   187->346 3d8vA PDBj 8e-22 19.4 %
:RPS:SCOP  190->329 2npoA1  b.81.1.8 * 2e-20 21.8 %
:HMM:SCOP  42->337 2f9cA1 b.81.1.7 * 4e-75 43.5 %
:RPS:PFM   36->102 PF04613 * LpxD 7e-05 31.3 %
:HMM:PFM   33->103 PF04613 * LpxD 1.2e-19 26.8 71/72  
:HMM:PFM   135->152 PF00132 * Hexapep 0.00058 55.6 18/18  
:HMM:PFM   147->163 PF00132 * Hexapep 3.6e-06 70.6 17/18  
:HMM:PFM   184->198 PF00132 * Hexapep 0.00013 46.7 15/18  
:HMM:PFM   241->258 PF00132 * Hexapep 3.9e-05 33.3 18/18  
:BLT:SWISS 1->355 LPXD_AGRT5 0.0 100.0 %
:PROS 132->160|PS00101|HEXAPEP_TRANSFERASES
:PROS 286->314|PS00101|HEXAPEP_TRANSFERASES
:REPEAT 2|228->272|274->314
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87174.1 GT:GENE lpxD GT:PRODUCT UDP glucosamine N-acyltransferase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1376888..1377955 GB:FROM 1376888 GB:TO 1377955 GB:DIRECTION + GB:GENE lpxD GB:PRODUCT UDP glucosamine N-acyltransferase GB:PROTEIN_ID AAK87174.1 GB:DB_XREF GI:15156448 GB:GENE:GENE lpxD LENGTH 355 SQ:AASEQ MEYNAFFPPHEGLRLKDIADLFGAELSDDAAGERIIRSVAPVYRAKPDQLCYILSRKSGEELLTCEAGAVICDAALKSLIPSHIPALISKTPHTLFAQVGALLHPSAMRPSLVARMEAEISPAAYVDPSAKLEPGVIVEPMAVIGAGVHIGAGTRIGPGVVIGSDVQIGRDCTIAGGASILAALLGNNVIIHNGARIGQDGFGYAPGPRGMLKIVQIGRVIIQDHVEVGANTTIDRGTMDDTVIGEGTKIDNQVQIGHNVRIGRHCGIVSGVGIAGSTRIGDGVMIGGATGVNGHITIGDGVQIAAMSGVVSDVPAGTRYGGIPARPMKHFLRDMADILARAEERDKKTGEKNNG GT:EXON 1|1-355:0| SW:ID LPXD_AGRT5 SW:DE RecName: Full=UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase; EC=2.3.1.-; SW:GN Name=lpxD; OrderedLocusNames=Atu1382; ORFNames=AGR_C_2556; SW:KW Acyltransferase; Complete proteome; Lipid A biosynthesis;Lipid synthesis; Repeat; Transferase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->355|LPXD_AGRT5|0.0|100.0|355/355| GO:SWS:NREP 4 GO:SWS GO:0008415|"GO:acyltransferase activity"|Acyltransferase| GO:SWS GO:0009245|"GO:lipid A biosynthetic process"|Lipid A biosynthesis| GO:SWS GO:0008610|"GO:lipid biosynthetic process"|Lipid synthesis| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| PROS 132->160|PS00101|HEXAPEP_TRANSFERASES|PDOC00094| PROS 286->314|PS00101|HEXAPEP_TRANSFERASES|PDOC00094| NREPEAT 1 REPEAT 2|228->272|274->314| SEG 142->153|avigagvhigag| SEG 174->186|iaggasilaallg| BL:PDB:NREP 1 BL:PDB:REP 15->345|2iu8C|1e-45|38.3|316/346| RP:PDB:NREP 1 RP:PDB:REP 187->346|3d8vA|8e-22|19.4|160/478| RP:PFM:NREP 1 RP:PFM:REP 36->102|PF04613|7e-05|31.3|67/72|LpxD| HM:PFM:NREP 5 HM:PFM:REP 33->103|PF04613|1.2e-19|26.8|71/72|LpxD| HM:PFM:REP 135->152|PF00132|0.00058|55.6|18/18|Hexapep| HM:PFM:REP 147->163|PF00132|3.6e-06|70.6|17/18|Hexapep| HM:PFM:REP 184->198|PF00132|0.00013|46.7|15/18|Hexapep| HM:PFM:REP 241->258|PF00132|3.9e-05|33.3|18/18|Hexapep| GO:PFM:NREP 2 GO:PFM GO:0009245|"GO:lipid A biosynthetic process"|PF04613|IPR020573| GO:PFM GO:0016747|"GO:transferase activity, transferring acyl groups other than amino-acyl groups"|PF04613|IPR020573| RP:SCP:NREP 1 RP:SCP:REP 190->329|2npoA1|2e-20|21.8|119/193|b.81.1.8| HM:SCP:REP 42->337|2f9cA1|4e-75|43.5|278/0|b.81.1.7|1/1|Trimeric LpxA-like enzymes| OP:NHOMO 938 OP:NHOMOORG 594 OP:PATTERN -------------------------------------------2---1-------------------- 222--------------------------------------------------------------------------------113221121-1111--234433321-211111111111111122222222222-11-------1223222113312122211241111211122212112-----121-------------------------------1---------------------------------------------------------------1--11111111111-------------1-1---1111----1------------11--------------------1--------131111111111111111112-1211211111111111-1111111111111111111111111111311112111111111111121211111------------1111111111111----11----22222222222222222222222222222222222222221222111111211113222232222---11111111112--2111111111121111111-21111111111111122221122112211112121221113222222222222222222--11212------12221222222222222-2222222322222222222222222222222222222222222323222222231111111111122111111133332221121222222221122222222212213222322232122222122233333323111111111122222111111111111111121333322---------------------------------------11-----111 ------------------------------------------------------------------------------------------------------------1------------------------------------------------------1-----------11--B------1-4-42---122- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 339 STR:RPRED 95.5 SQ:SECSTR #############EHHHHHHHTTcEEEcc##cccEEcEEccTTTccTTEEEEcccccGGGGGGGccccEEEEcTTTcEEEEcccHGGGccccEEEcccHHHHHHHHHHHHcccccccccccTTcEEcTTcEEcTTcEEcTTcEEcTTcEEcTTcEEcTTcEEcTTcEEcTTcEEccccEEcTTcEEEEEEEcTTcEEccEEEEEEEEcTTcEEcccETTEEEcTTcEEEEEEEEEccEEcTTcEEEEEEEEEcEEEccccEEccccEEEccccccccEEEcTTcEEccccEEEcccEEcTTcEEcTTcEEcccccTTEEcccccccccTTHHHHHcTTcTTTHHHHHHHHHHTT# DISOP:02AL 341-355| PSIPRED cccccEEcccccccHHHHHHHHccEEEEcccccEEEEEEccHHHcccccEEEEEccHHHHHHHccccEEEEEcHHHHHHHccccEEEEEccHHHHHHHHHHHHHHHHccHHHHcccccccccEEEEccccEEccccEEccEEEEccccEEccccEEcccEEEccccEEccccEEccccEEEccccccccEEEcccccccccccccccccEEEEEcccccEEEccccEEcccEEEEcccccccEEccccEEcccEEEccccEEccccEEcccccccccEEEccccEEccccEEEccEEEccccEEEcccEEEcccccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcc //