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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : lysA.1
DDBJ      :lysA         diaminopimelate decarboxylase
Swiss-Prot:             

Homologs  Archaea  34/68 : Bacteria  756/915 : Eukaryota  70/199 : Viruses  0/175   --->[See Alignment]
b.49.2c.1.6
:393 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   10->393 2j66A PDBj 3e-56 35.5 %
:RPS:PDB   3->393 3c5qA PDBj 2e-38 28.6 %
:RPS:SCOP  16->267 1hkvA2  c.1.6.1 * 3e-32 23.0 %
:RPS:SCOP  253->391 1knwA1  b.49.2.3 * 9e-16 20.4 %
:HMM:SCOP  16->269 1hkvA2 c.1.6.1 * 1.3e-61 40.9 %
:HMM:SCOP  238->393 1knwA1 b.49.2.3 * 2.2e-36 40.3 %
:RPS:PFM   37->267 PF02784 * Orn_Arg_deC_N 3e-27 36.6 %
:RPS:PFM   311->356 PF00278 * Orn_DAP_Arg_deC 1e-04 41.3 %
:HMM:PFM   18->266 PF02784 * Orn_Arg_deC_N 1.2e-47 30.3 244/251  
:HMM:PFM   271->383 PF00278 * Orn_DAP_Arg_deC 7e-18 31.8 107/116  
:BLT:SWISS 3->391 DCDA_METTH 1e-36 29.8 %
:PROS 1->4|PS00228|TUBULIN_B_AUTOREG
:PROS 202->219|PS00879|ODR_DC_2_2
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87445.2 GT:GENE lysA.1 GT:PRODUCT diaminopimelate decarboxylase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1660004..1661185 GB:FROM 1660004 GB:TO 1661185 GB:DIRECTION + GB:GENE lysA GB:PRODUCT diaminopimelate decarboxylase GB:PROTEIN_ID AAK87445.2 GB:DB_XREF GI:159140149 GB:GENE:GENE lysA LENGTH 393 SQ:AASEQ MRDIVAETGTPCFLYDNSAMRQAYRDLETALSGFADIYYSVKANPLPAIISLFREEGAGAEIASVGEYRAAVKAGVAPDNIIFAGPGKSMAELREVIEGGIGEIHIESAEEIARIEAINRPVKASIRINPVPDAQAGAMRMGGKATAFGFDEEELENVLKLFANVRHIDLVGIHIYGGTQILDADMLVSQWRHAIALAGRMAQMLGKPLETIDLGGGLGIPYFAGETSLDLAKVAAAIPDLKALLKAHPLIADAHVIVEPGRFLAGPGGLYVVEVNSVKTSRGTTFVVTDGGMHHHLAASGNLGQIVKRNYPIVAPAMMQAAHDETATIVGPLCTPLDTLARNATLPKLNAGDLLAILQSGAYGASASPGGFLSHTVAKEVLVEDGAFEVIGR GT:EXON 1|1-393:0| BL:SWS:NREP 1 BL:SWS:REP 3->391|DCDA_METTH|1e-36|29.8|379/428| PROS 1->4|PS00228|TUBULIN_B_AUTOREG|PDOC00200| PROS 202->219|PS00879|ODR_DC_2_2|PDOC00685| SEG 95->118|evieggigeihiesaeeiarieai| SEG 360->371|sgaygasaspgg| BL:PDB:NREP 1 BL:PDB:REP 10->393|2j66A|3e-56|35.5|361/390| RP:PDB:NREP 1 RP:PDB:REP 3->393|3c5qA|2e-38|28.6|370/394| RP:PFM:NREP 2 RP:PFM:REP 37->267|PF02784|3e-27|36.6|224/249|Orn_Arg_deC_N| RP:PFM:REP 311->356|PF00278|1e-04|41.3|46/139|Orn_DAP_Arg_deC| HM:PFM:NREP 2 HM:PFM:REP 18->266|PF02784|1.2e-47|30.3|244/251|Orn_Arg_deC_N| HM:PFM:REP 271->383|PF00278|7e-18|31.8|107/116|Orn_DAP_Arg_deC| GO:PFM:NREP 2 GO:PFM GO:0003824|"GO:catalytic activity"|PF02784|IPR000183| GO:PFM GO:0003824|"GO:catalytic activity"|PF00278|IPR000183| RP:SCP:NREP 2 RP:SCP:REP 16->267|1hkvA2|3e-32|23.0|252/265|c.1.6.1| RP:SCP:REP 253->391|1knwA1|9e-16|20.4|137/174|b.49.2.3| HM:SCP:REP 16->269|1hkvA2|1.3e-61|40.9|254/265|c.1.6.1|1/1|PLP-binding barrel| HM:SCP:REP 238->393|1knwA1|2.2e-36|40.3|149/0|b.49.2.3|1/1|Alanine racemase C-terminal domain-like| OP:NHOMO 1090 OP:NHOMOORG 860 OP:PATTERN -----------------1-----11--11111111111111112111111111----1---1111--- 111131111111-122211-1111-111111-1111121112121-111---111112--3211221323111111111-2111121111111112-11111-1111111---------------111111111211111111111111111111111111111111111111-11111111111---1111111111111111111111111111111111111111111211222222222222221111111--1111-1--11111-11111-11-------11111111111111-------------111111111111-1111111111113211211111---1--111112--1111112---1121111111121111111111112122222222221-2212222111112222111111111111111211111111111111111111122---11111---------------------12232111111111121111111131111112122112211112112111122111122111111111111333223122111111212221212-1111-11112211111111111111111111111111111222111311211111121122111112111---2221-1----11231111111111111-1111111111111111111111112212222222222222222111111112-111111111111---2-1---111111112111111111111111111311212121112133221333221222-1-1211-111111111112222112222222211111111----------------1-------------------------122111-111111 ----31--1-1-11-1----11-1-1----------------------11-----1-------1-------1---11-1-------1----1-----------112-1-11-4-111-1-----11-1-211-111-------1-----------2-11--1-311--21---34133-G---122112-21--22221 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 393 STR:RPRED 100.0 SQ:SECSTR HHHHHHHccccEEEEEHHHHHHHHHHHHHHTcccEEEEEEGGGcccHHHHHHHHHTTcEEEEccHHHHHHHHHHTccGGGEEEccTTccHHHHHTTccEEEEccHHHHHHHHHHHHHHTccEEEEEEccccccccccGGGcccTTccccccHHHHHHHHHHHHHcTTEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHHTTccccEEEccccccccTTcccccHcHHHHHHHHHHHHHTTTcccGGGccEEEEcccHHHHTTTEEEEEEEEEEEEEccccEEEEcccTTTccHHHHHcccHccccccEEEccccTcccEEEEEEEcccccTTcEEEEEEEEEcccTTcEEEEccccccccGGGcccTTTccccEEEEEHcccEEEEEc PSIPRED cHHHHHHccccEEEEEHHHHHHHHHHHHHHcccccEEEEEEEccccHHHHHHHHHccccEEEEcHHHHHHHHHccccHHHEEEEcccccHHHHHHHHHccccEEEEccHHHHHHHHHHccccEEEEEEEEcccccccccccccccccccccHHHHHHHHHHHHHccccEEEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHcccccEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHccccccEEEEEcccHHccccEEEEEEEEEEEEccccEEEEEccccccccccccccccHHcccccccccccccccccEEEEEEccccccccEEEEEEEccccccccEEEEEcccHHHHHHHccccccccccEEEEEEccEEEEEEc //