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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : lytB
DDBJ      :lytB         4-hydroxy-3-methylbut-2-enyl diphosphate reductase
Swiss-Prot:ISPH_AGRT5   RecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase;         EC=1.17.1.2;

Homologs  Archaea  0/68 : Bacteria  705/915 : Eukaryota  19/199 : Viruses  0/175   --->[See Alignment]
d.36.1
:348 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   10->290 3f7tA PDBj 1e-73 50.9 %
:RPS:PDB   10->295 3dnfA PDBj 1e-62 30.8 %
:RPS:SCOP  22->195 1eypA  d.36.1.1 * 9e-26 13.3 %
:RPS:PFM   12->291 PF02401 * LYTB 1e-78 55.3 %
:HMM:PFM   12->294 PF02401 * LYTB 5e-100 45.2 279/281  
:BLT:SWISS 1->348 ISPH_AGRT5 0.0 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86583.1 GT:GENE lytB GT:PRODUCT 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 769735..770781 GB:FROM 769735 GB:TO 770781 GB:DIRECTION + GB:GENE lytB GB:PRODUCT 4-hydroxy-3-methylbut-2-enyl diphosphate reductase GB:PROTEIN_ID AAK86583.1 GB:DB_XREF GI:15155749 GB:GENE:GENE lytB LENGTH 348 SQ:AASEQ MNIAVSKPPLTIRLCGPRGFCAGVDRAIQIVVLALKAYGAPVYVRHEIVHNRYVVEGLEAKGAIFVEELHEIPAEHREQPVVFSAHGVPKSVPEDAQARNLFYLDATCPLVSKVHKQAMRHQRLGRHVVLIGHAGHPEVIGTMGQLPEGTVSLVETVEDAGVYEPVDRENLGFVTQTTLSVDDTAGVIARLQERFPAIQAPAADSICYATTNRQDAVKQAAPGCDLFIVVGAPNSSNSKRLVEVALRAGAKHSVLVQRASEIDWNEIGDIRTVGLSAGASAPEVIVDEIIEAFKARFDTTLDLAVTVEETEHFLVNRELRSIELTTDDMAFVNGNASNALPPKATAGI GT:EXON 1|1-348:0| SW:ID ISPH_AGRT5 SW:DE RecName: Full=4-hydroxy-3-methylbut-2-enyl diphosphate reductase; EC=1.17.1.2; SW:GN Name=ispH; Synonyms=lytB; OrderedLocusNames=Atu0774;ORFNames=AGR_C_1414; SW:KW 3Fe-4S; Complete proteome; Iron; Iron-sulfur; Isoprene biosynthesis;Metal-binding; NADP; Oxidoreductase. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->348|ISPH_AGRT5|0.0|100.0|348/348| GO:SWS:NREP 6 GO:SWS GO:0051538|"GO:3 iron, 4 sulfur cluster binding"|3Fe-4S| GO:SWS GO:0051536|"GO:iron-sulfur cluster binding"|Iron-sulfur| GO:SWS GO:0008299|"GO:isoprenoid biosynthetic process"|Isoprene biosynthesis| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0016491|"GO:oxidoreductase activity"|Oxidoreductase| GO:SWS GO:0055114|"GO:oxidation reduction"|Oxidoreductase| BL:PDB:NREP 1 BL:PDB:REP 10->290|3f7tA|1e-73|50.9|277/310| RP:PDB:NREP 1 RP:PDB:REP 10->295|3dnfA|1e-62|30.8|279/281| RP:PFM:NREP 1 RP:PFM:REP 12->291|PF02401|1e-78|55.3|275/280|LYTB| HM:PFM:NREP 1 HM:PFM:REP 12->294|PF02401|5e-100|45.2|279/281|LYTB| GO:PFM:NREP 2 GO:PFM GO:0019288|"GO:isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway"|PF02401|IPR003451| GO:PFM GO:0055114|"GO:oxidation reduction"|PF02401|IPR003451| RP:SCP:NREP 1 RP:SCP:REP 22->195|1eypA|9e-26|13.3|166/212|d.36.1.1| OP:NHOMO 800 OP:NHOMOORG 724 OP:PATTERN -------------------------------------------------------------------- 111111111111-111122-21112122222111111111122211111111-111111111112111111111111111-1-1111111111111---------1111111111111111111111111111111-----111-2--1-11-----111111--11--------------1-1111111111111111-1111111111111111111111-11-111--111-----------------------------------------------------------------------------------------1111111111111111111111111111111111111111111111111-111111111111112222222222211111111111-11111211111-11111111111111111111111111111111111111111111111111111---------------111111111111111222222222222222222212222222211111111111111111111111111111111111111-111111111111111111111111111--111111111111111111111111111111111111111111111111111111111111--111111-11111111111111111111-11111111111111111111111111111111111111111111111111111111111111111-111---------1111111111111111111111111111111111211111111111111111111111-11111111111111111111111111111111111111--------11-------------------1------1111111111-1- 12------1---------------------------------------------------------------------------------------------------------------------------------------------------------------------11--1I11111-132--111----1 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 288 STR:RPRED 82.8 SQ:SECSTR #######cEcEEEEcTTccccHHHHHHHHHHHHHTTTccccEEEcccccccHHHHHHHHHHTEEEEcccccccTTcETcEEEEcTTcccHHHHHHHHHTTcEEEEcccHHHHHHHHHHHHHHHTTcEEEEEccTTcHHHHHHHHHHHHTTccEEEEccGGGGGGGGGccEEEEEEcTTccHHHHHHHHHHHHHHccEEEEcEccccccHHHHHHHHHHHHGGGccEEEEEccTTcHHHHHHHHHHHHHcccEEEEEccGGGccGGGGTTccEEEEEEcTTccHHHHHHHHHHHHH##################################################### DISOP:02AL 1-7, 344-345, 347-348| PSIPRED ccccccccccEEEEEccccccHHHHHHHHHHHHHHHHccccEEEEccEEEcHHHHHHHHHcccEEEccHHHccccccccEEEEEcccccHHHHHHHHHcccEEEEcccccHHHHHHHHHHHHHcccEEEEEEcccccEEEEEEEEEccccEEEEccHHHHHHccccccccEEEEEEEEccHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHccEEEEEcccccccHHHHHHHHHHcccccEEEEccHHHccHHHHccccEEEEEccccccHHHHHHHHHHHHHHcccccEEEEcEEEEEEEccccccccccccHHHHHHHHccccccccccccccc //