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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : miaA
DDBJ      :miaA         tRNA delta(2)-isopentenylpyrophosphate
Swiss-Prot:MIAA_RHIRD   RecName: Full=tRNA Delta(2)-isopentenylpyrophosphate transferase;         Short=IPP transferase;         EC=2.5.1.8;AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase;         Short=IPTase;         Short=IPPT;AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase;         Short=DMAPP:tRNA dimethylallyltransferase;         Short=DMATase;

Homologs  Archaea  0/68 : Bacteria  884/915 : Eukaryota  156/199 : Viruses  0/175   --->[See Alignment]
c.37.1
:298 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   11->293 2zxuB PDBj 5e-51 38.4 %
:RPS:PDB   12->289 3d3qB PDBj 3e-19 28.4 %
:RPS:SCOP  12->136 1c9kA  c.37.1.11 * 1e-05 22.1 %
:HMM:SCOP  11->156 1cbuA_ c.37.1.11 * 2e-23 42.6 %
:RPS:PFM   10->69 PF01745 * IPT 1e-06 39.0 %
:RPS:PFM   44->288 PF01715 * IPPT 7e-46 43.9 %
:HMM:PFM   43->296 PF01715 * IPPT 1.5e-94 44.0 252/253  
:HMM:PFM   12->69 PF01745 * IPT 7.3e-11 43.9 57/233  
:BLT:SWISS 1->298 MIAA_RHIRD e-169 100.0 %

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87792.2 GT:GENE miaA GT:PRODUCT tRNA delta(2)-isopentenylpyrophosphate GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1998197..1999093) GB:FROM 1998197 GB:TO 1999093 GB:DIRECTION - GB:GENE miaA GB:PRODUCT tRNA delta(2)-isopentenylpyrophosphate GB:PROTEIN_ID AAK87792.2 GB:DB_XREF GI:159140297 GB:GENE:GENE miaA LENGTH 298 SQ:AASEQ MMKNLDQNFDAILITGPTASGKSALALRLARERNGVVINADSMQVYDTLRVLTARPSDHEMEGVPHRLYGHVPAGSAYSTGEWLRDISGLLSDLRGEGRFPVIVGGTGLYFKALTGGLSDMPAIPDDLREGLRARLIEEGAAKLHAELVSRDPSMAQMLQPGDGQRIVRALEVLEATGKSIRDFQRASGPMIIDPERAQKFIVLPERPVLHDRINRRFEAMMDSGAVEEVQALLALNLAPDATAMKAIGVAQIADMLTGRMGAAEVIEKSAAATRQYAKRQMTWFRNQMGDDWTRIQP GT:EXON 1|1-298:0| SW:ID MIAA_RHIRD SW:DE RecName: Full=tRNA Delta(2)-isopentenylpyrophosphate transferase; Short=IPP transferase; EC=2.5.1.8;AltName: Full=Isopentenyl-diphosphate:tRNA isopentenyltransferase; Short=IPTase; Short=IPPT;AltName: Full=Dimethylallyl diphosphate:tRNA dimethylallyltransferase; Short=DMAPP:tRNA dimethylallyltransferase; Short=DMATase; SW:GN Name=miaA; SW:KW ATP-binding; Magnesium; Nucleotide-binding; Nucleotidyltransferase;Transferase; tRNA processing; Virulence. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->298|MIAA_RHIRD|e-169|100.0|298/298| GO:SWS:NREP 6 GO:SWS GO:0005524|"GO:ATP binding"|ATP-binding| GO:SWS GO:0000166|"GO:nucleotide binding"|Nucleotide-binding| GO:SWS GO:0016779|"GO:nucleotidyltransferase activity"|Nucleotidyltransferase| GO:SWS GO:0016740|"GO:transferase activity"|Transferase| GO:SWS GO:0008033|"GO:tRNA processing"|tRNA processing| GO:SWS GO:0009405|"GO:pathogenesis"|Virulence| BL:PDB:NREP 1 BL:PDB:REP 11->293|2zxuB|5e-51|38.4|281/305| RP:PDB:NREP 1 RP:PDB:REP 12->289|3d3qB|3e-19|28.4|264/290| RP:PFM:NREP 2 RP:PFM:REP 10->69|PF01745|1e-06|39.0|59/229|IPT| RP:PFM:REP 44->288|PF01715|7e-46|43.9|239/251|IPPT| HM:PFM:NREP 2 HM:PFM:REP 43->296|PF01715|1.5e-94|44.0|252/253|IPPT| HM:PFM:REP 12->69|PF01745|7.3e-11|43.9|57/233|IPT| GO:PFM:NREP 5 GO:PFM GO:0004161|"GO:dimethylallyltranstransferase activity"|PF01745|IPR002648| GO:PFM GO:0009058|"GO:biosynthetic process"|PF01745|IPR002648| GO:PFM GO:0004811|"GO:tRNA isopentenyltransferase activity"|PF01715|IPR002627| GO:PFM GO:0005524|"GO:ATP binding"|PF01715|IPR002627| GO:PFM GO:0008033|"GO:tRNA processing"|PF01715|IPR002627| RP:SCP:NREP 1 RP:SCP:REP 12->136|1c9kA|1e-05|22.1|104/170|c.37.1.11| HM:SCP:REP 11->156|1cbuA_|2e-23|42.6|129/0|c.37.1.11|1/1|P-loop containing nucleoside triphosphate hydrolases| OP:NHOMO 1127 OP:NHOMOORG 1040 OP:PATTERN -------------------------------------------------------------------- 1111111111111111111-11112111111211111111111111111111111111111111111111111111111111-11111222222221--111111112121111111111111111111111111-1111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111-1111111111111111111111111111-11111111111-11111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111222211222111111211111111111111111111111111111111111111111111111111111111211-11111-1111111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111112111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111112111111-------1------1------1111111111111 -1-1322----1-111211-1111111111111111-11111111111111212111-1111-1111111111111111111111111-11-2111----11-1---1-2-11121---11-1111-213B1-212-1--11111111-11112111121111211-11--111-1--29222-16327-91--11111 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 283 STR:RPRED 95.0 SQ:SECSTR ##########EEEEEccTTccHHHHHHHHHHHTTEEEEEcccTTcTTcTTTTcccTTTTTccEEccEEcccccTTccccHHHHHHHHHHHHHHHHHTTcEEEEEcccHHHHHHHHccHccccccccHHHHHHHHHHHcccccHHHHHHHTTcHHHHHTccTTcHHHHHHHHHHHHHHcccHHHHHHHHHHHcHccccEEEEEEEEcHHHHHHHHHHHHcHHHHHTHHHHHHHHHHTTcTTccTTGGcTTTTTHHHHHHTccccHHHHHHHHHHHHHHHHHHHHHHHHTcTEEE##### DISOP:02AL 1-11,188-188| PSIPRED ccccccccccEEEEEccccccHHHHHHHHHHHcccEEEEEcHHHHccccccccccccHHHHccccEEEEEEEcccccccHHHHHHHHHHHHHHHHHcccEEEEEccccHHHHHHHccccccccccHHHHHHHHHHHHcccHHHHHHHHHHHcHHHHHHcccccHHHHHHHHHHHHHHcccHHHHHHHccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccccccHHHHccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccc //