[GTOP] [HELP] [ORGANISMS] [SEARCH] [SUMMARY]
Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : murF
DDBJ      :murF         UDP-MurNAc-pentapeptide synthetase
Swiss-Prot:             

Homologs  Archaea  0/68 : Bacteria  838/915 : Eukaryota  3/199 : Viruses  0/175   --->[See Alignment]
c.59.1c.72.2c.98.1
:477 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   26->416 1gg4A PDBj 2e-35 32.7 %
:RPS:PDB   11->461 1e8cA PDBj 1e-51 14.8 %
:RPS:SCOP  5->104 1gg4A3  c.98.1.1 * 7e-17 27.7 %
:RPS:SCOP  107->321 1gg4A4  c.72.2.1 * 8e-24 28.8 %
:RPS:SCOP  322->463 1gg4A1  c.59.1.1 * 3e-20 34.1 %
:HMM:SCOP  5->104 1e8cA1 c.98.1.1 * 9.2e-23 42.3 %
:HMM:SCOP  106->321 1gg4A4 c.72.2.1 * 3.7e-52 35.2 %
:HMM:SCOP  325->464 1gg4A1 c.59.1.1 * 2.5e-36 47.4 %
:RPS:PFM   29->89 PF01225 * Mur_ligase 2e-06 49.2 %
:RPS:PFM   112->302 PF08245 * Mur_ligase_M 3e-11 29.7 %
:HMM:PFM   112->301 PF08245 * Mur_ligase_M 5.1e-48 34.2 184/188  
:HMM:PFM   26->100 PF01225 * Mur_ligase 2.2e-20 43.8 73/76  
:HMM:PFM   328->392 PF02875 * Mur_ligase_C 1e-12 30.6 62/91  
:BLT:SWISS 29->460 MURF_RICCN 2e-57 32.6 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87848.1 GT:GENE murF GT:PRODUCT UDP-MurNAc-pentapeptide synthetase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(2062279..2063712) GB:FROM 2062279 GB:TO 2063712 GB:DIRECTION - GB:GENE murF GB:PRODUCT UDP-MurNAc-pentapeptide synthetase GB:PROTEIN_ID AAK87848.1 GB:DB_XREF GI:15157232 GB:GENE:GENE murF LENGTH 477 SQ:AASEQ MSWLWTVADMIAITAGRPVGNLPTGITGISIDSRTVKQGEAFFAIKGDRVDGHDYTSFAVANGASLLVVAEAKLPALGRLTVPMIVVEDVLAALGKLALAARERTSARIIAVTGSVGKTTTKEMLRQALAPSGRVHAAVASFNNHWGVPLTLARMPADTEFGVFEIGMNHSGEIRPLVKMVRPHVAIITTIAPAHLGNFKNIEEIAAAKAEIFEGVEEGGSVILNRDNAQFEQLEEAAQEAGIEHILTFGQHAKADFRLADFESTTTGSTIWAILNGETSELHINIPGRHIADNAMAVLGAVAVTGANLDRALEALGTLEAVKGRGQRHHLTINGGSFLLIDESYNANPASMRAAIAVLAETETQGHGRRVAVLGDMLEMGEFSAQLHEELAGPLLAAGIEHVWLAGEAMAALRDALPDSVTVIWFPTTAELTDFALQWVQPGDALMVKSSLGLGFGKIVAALLDKYPAFPETERQV GT:EXON 1|1-477:0| BL:SWS:NREP 1 BL:SWS:REP 29->460|MURF_RICCN|2e-57|32.6|417/449| SEG 91->101|laalgklalaa| SEG 202->214|ieeiaaakaeife| SEG 229->241|aqfeqleeaaqea| BL:PDB:NREP 1 BL:PDB:REP 26->416|1gg4A|2e-35|32.7|361/430| RP:PDB:NREP 1 RP:PDB:REP 11->461|1e8cA|1e-51|14.8|431/482| RP:PFM:NREP 2 RP:PFM:REP 29->89|PF01225|2e-06|49.2|59/76|Mur_ligase| RP:PFM:REP 112->302|PF08245|3e-11|29.7|185/187|Mur_ligase_M| HM:PFM:NREP 3 HM:PFM:REP 112->301|PF08245|5.1e-48|34.2|184/188|Mur_ligase_M| HM:PFM:REP 26->100|PF01225|2.2e-20|43.8|73/76|Mur_ligase| HM:PFM:REP 328->392|PF02875|1e-12|30.6|62/91|Mur_ligase_C| GO:PFM:NREP 4 GO:PFM GO:0005524|"GO:ATP binding"|PF01225|IPR000713| GO:PFM GO:0009058|"GO:biosynthetic process"|PF01225|IPR000713| GO:PFM GO:0005524|"GO:ATP binding"|PF08245|IPR013221| GO:PFM GO:0009058|"GO:biosynthetic process"|PF08245|IPR013221| RP:SCP:NREP 3 RP:SCP:REP 5->104|1gg4A3|7e-17|27.7|94/98|c.98.1.1| RP:SCP:REP 107->321|1gg4A4|8e-24|28.8|205/206|c.72.2.1| RP:SCP:REP 322->463|1gg4A1|3e-20|34.1|132/135|c.59.1.1| HM:SCP:REP 5->104|1e8cA1|9.2e-23|42.3|97/101|c.98.1.1|1/1|MurE/MurF N-terminal domain| HM:SCP:REP 106->321|1gg4A4|3.7e-52|35.2|213/214|c.72.2.1|1/1|MurD-like peptide ligases, catalytic domain| HM:SCP:REP 325->464|1gg4A1|2.5e-36|47.4|133/135|c.59.1.1|1/1|MurD-like peptide ligases, peptide-binding domain| OP:NHOMO 927 OP:NHOMOORG 841 OP:PATTERN -------------------------------------------------------------------- 1112211111111111111-11--1111111112121111111211111111111111112211111111111111111111111112222212221--212211322-21111111--1111122111111111122222---211111111111111111111111111111111111111111111112111121212212221121111222221115111111111211111111111111112112111111111111111111111111111111111111111111111111111111111111111111111111311111111111111111111111111111212231211112111111111-111111111111111111111111111111111-111112111111111111111111211112121111111111111111111111111--------1111112121121121111111111111111111111111111111111111111111111111111111113111111111111111111311111111111111111-111111-11211111111-----------1--111-11-----111111111111111111111111111111111-11111-1-1-111111111111111111-111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111121111111111111111111111111111111111111111111222221121111111111111111111111111111111111-1--------------------------12111-1-1-111 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------1------3-----1------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 466 STR:RPRED 97.7 SQ:SECSTR ##########HHHHHTTTcTTccccccccEccGGGccTTcEEEEcccccccGGGGHHHHHHTTccEEEEEcTcTTcEEETTEEEEEETTHHHHHHHHHHHHTTcHHHHHHHHHHHTTccEEEETTEEEETTcccEcccccccccHHHHHHHHHHHHHTTccEEEEccHHcTHHHTTTTTTccccEEEEcccccccHHHHccHHHHHHHHHHHHHHTccccEEEEETTcGGGGHHHHHHHTTcTTcEEEEcccccTTTccEEEEEEccccEEEEEEETTccEEEEEcccHHHHHHHHHHHHHHHHTTccHHHHHHHGGGccccTTcEEEccTccTTccEEEEEccccccHHHHHHHHHHHHHcccTccccEEEEEccccccccTHHHHHHHHHHHccEEEEccccccTccHHHHHHHHHTTGGGcEEccHHHHHHHHHHHccTTcEEEEEccTTccEEEETTHHHcHHHHHHHHHHH# DISOP:02AL 471-477| PSIPRED ccccccHHHHHHHHccEEEccccccEEEEEEcccccccccEEEEEccccccHHHHHHHHHHccccEEEEcccccccccccccEEEEEccHHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHHHHHHccccEEEEcccccccccHHHHHHccccccEEEEEEEHHHHHHHHHHHHHccccEEEEEcccHHHHHHcccHHHHHHHHHHHHHccccccEEEEEcccHHHHHHHHHHHcccccEEEEEcccccccEEEEEEEEccccEEEEEEEcccEEEEEEccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHcccccccEEEEEEEEccccEEEEEEcccccHHHHHHHHHHHHHHccccccEEEEEEcccccccccHHHHHHHHHHHHHHccccEEEEEcccHHHHHHHHHccccEEEEccHHHHHHHHHHHcccccEEEEEccccccHHHHHHHHHHHccccccccccc //