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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : mutM
DDBJ      :mutM         formamidopyrimidine-DNA glycosylase
Swiss-Prot:FPG_AGRT5    RecName: Full=Formamidopyrimidine-DNA glycosylase;         Short=Fapy-DNA glycosylase;         EC=3.2.2.23;AltName: Full=DNA-(apurinic or apyrimidinic site) lyase mutM;         Short=AP lyase mutM;         EC=4.2.99.18;

Homologs  Archaea  0/68 : Bacteria  721/915 : Eukaryota  48/199 : Viruses  0/175   --->[See Alignment]
a.156.1b.113.1g.39.1
:298 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   2->298 1r2zA PDBj 8e-47 41.0 %
:RPS:PDB   2->298 1ee8A PDBj 4e-74 43.3 %
:RPS:SCOP  2->150 1k82A2  b.113.1.1 * 5e-34 40.6 %
:RPS:SCOP  151->244 1ee8A1  a.156.1.2 * 2e-25 43.2 %
:RPS:SCOP  245->298 1ee8A3  g.39.1.8 * 3e-19 50.0 %
:HMM:SCOP  2->159 1nnjA2 b.113.1.1 * 5.3e-38 46.6 %
:HMM:SCOP  149->246 1tdhA1 a.156.1.2 * 4.2e-28 42.9 %
:HMM:SCOP  244->298 1ee8A3 g.39.1.8 * 2.4e-15 50.9 %
:RPS:PFM   2->131 PF01149 * Fapy_DNA_glyco 7e-22 49.6 %
:RPS:PFM   150->244 PF06831 * H2TH 1e-22 56.2 %
:RPS:PFM   268->298 PF06827 * zf-FPG_IleRS 1e-06 69.0 %
:HMM:PFM   2->133 PF01149 * Fapy_DNA_glyco 2e-35 43.9 114/116  
:HMM:PFM   150->245 PF06831 * H2TH 2e-21 35.6 90/93  
:HMM:PFM   268->298 PF06827 * zf-FPG_IleRS 8.5e-12 55.2 29/30  
:BLT:SWISS 1->298 FPG_AGRT5 e-166 100.0 %
:PROS 271->297|PS01242|ZF_FPG_1
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK86137.2 GT:GENE mutM GT:PRODUCT formamidopyrimidine-DNA glycosylase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 314611..315507 GB:FROM 314611 GB:TO 315507 GB:DIRECTION + GB:GENE mutM GB:PRODUCT formamidopyrimidine-DNA glycosylase GB:PROTEIN_ID AAK86137.2 GB:DB_XREF GI:159139583 GB:GENE:GENE mutM LENGTH 298 SQ:AASEQ MPELPEVETVRRGLAPAMEGARVRKLHLGRPDLRFPFPADFAGLIEGKTIISLGRRAKYLLIELEDGLTIVSHLGMSGSFRIEAEKGEGGEAPGAFHYARSKDGKHDHVVFHLDKGEERVCVIYNDPRRFGFMHLVERNKLDLYPAFAELGPEPTGNALSADYLASRFEGKSQPLKSTLLDQKIIAGLGNIYVCEALWRAHLSPLRAAGTLVTTRGKPKAQLIDLTEKIRDVIADAIAAGGSSLRDHIQTDGTLGYFQHSFSVYDQEGQPCRTPGCGGTVERVVQAGRSTFYCAACQK GT:EXON 1|1-298:0| SW:ID FPG_AGRT5 SW:DE RecName: Full=Formamidopyrimidine-DNA glycosylase; Short=Fapy-DNA glycosylase; EC=3.2.2.23;AltName: Full=DNA-(apurinic or apyrimidinic site) lyase mutM; Short=AP lyase mutM; EC=4.2.99.18; SW:GN Name=mutM; Synonyms=fpg; OrderedLocusNames=Atu0321;ORFNames=AGR_C_561; SW:KW Complete proteome; DNA damage; DNA repair; DNA-binding; Glycosidase;Hydrolase; Lyase; Metal-binding; Multifunctional enzyme; Zinc;Zinc-finger. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->298|FPG_AGRT5|e-166|100.0|298/298| GO:SWS:NREP 9 GO:SWS GO:0006974|"GO:response to DNA damage stimulus"|DNA damage| GO:SWS GO:0006281|"GO:DNA repair"|DNA repair| GO:SWS GO:0003677|"GO:DNA binding"|DNA-binding| GO:SWS GO:0016798|"GO:hydrolase activity, acting on glycosyl bonds"|Glycosidase| GO:SWS GO:0008152|"GO:metabolic process"|Glycosidase| GO:SWS GO:0016787|"GO:hydrolase activity"|Hydrolase| GO:SWS GO:0016829|"GO:lyase activity"|Lyase| GO:SWS GO:0046872|"GO:metal ion binding"|Metal-binding| GO:SWS GO:0003824|"GO:catalytic activity"|Multifunctional enzyme| PROS 271->297|PS01242|ZF_FPG_1|PDOC00956| SEG 83->95|eaekgeggeapga| BL:PDB:NREP 1 BL:PDB:REP 2->298|1r2zA|8e-47|41.0|271/273| RP:PDB:NREP 1 RP:PDB:REP 2->298|1ee8A|4e-74|43.3|261/266| RP:PFM:NREP 3 RP:PFM:REP 2->131|PF01149|7e-22|49.6|115/118|Fapy_DNA_glyco| RP:PFM:REP 150->244|PF06831|1e-22|56.2|89/92|H2TH| RP:PFM:REP 268->298|PF06827|1e-06|69.0|29/30|zf-FPG_IleRS| HM:PFM:NREP 3 HM:PFM:REP 2->133|PF01149|2e-35|43.9|114/116|Fapy_DNA_glyco| HM:PFM:REP 150->245|PF06831|2e-21|35.6|90/93|H2TH| HM:PFM:REP 268->298|PF06827|8.5e-12|55.2|29/30|zf-FPG_IleRS| GO:PFM:NREP 11 GO:PFM GO:0003684|"GO:damaged DNA binding"|PF01149|IPR012319| GO:PFM GO:0003906|"GO:DNA-(apurinic or apyrimidinic site) lyase activity"|PF01149|IPR012319| GO:PFM GO:0006284|"GO:base-excision repair"|PF01149|IPR012319| GO:PFM GO:0008270|"GO:zinc ion binding"|PF01149|IPR012319| GO:PFM GO:0016799|"GO:hydrolase activity, hydrolyzing N-glycosyl compounds"|PF01149|IPR012319| GO:PFM GO:0003684|"GO:damaged DNA binding"|PF06831|IPR015886| GO:PFM GO:0003906|"GO:DNA-(apurinic or apyrimidinic site) lyase activity"|PF06831|IPR015886| GO:PFM GO:0006289|"GO:nucleotide-excision repair"|PF06831|IPR015886| GO:PFM GO:0008270|"GO:zinc ion binding"|PF06831|IPR015886| GO:PFM GO:0016799|"GO:hydrolase activity, hydrolyzing N-glycosyl compounds"|PF06831|IPR015886| GO:PFM GO:0003824|"GO:catalytic activity"|PF06827|IPR010663| RP:SCP:NREP 3 RP:SCP:REP 2->150|1k82A2|5e-34|40.6|128/128|b.113.1.1| RP:SCP:REP 151->244|1ee8A1|2e-25|43.2|88/89|a.156.1.2| RP:SCP:REP 245->298|1ee8A3|3e-19|50.0|52/56|g.39.1.8| HM:SCP:REP 2->159|1nnjA2|5.3e-38|46.6|131/131|b.113.1.1|1/1|N-terminal domain of MutM-like DNA repair proteins| HM:SCP:REP 149->246|1tdhA1|4.2e-28|42.9|98/115|a.156.1.2|1/1|S13-like H2TH domain| HM:SCP:REP 244->298|1ee8A3|2.4e-15|50.9|53/56|g.39.1.8|1/1|Glucocorticoid receptor-like (DNA-binding domain)| OP:NHOMO 874 OP:NHOMOORG 769 OP:PATTERN -------------------------------------------------------------------- 112121122221-133333-32113233333342222233121232111122232212--22321132231-----------3--------------------1-1---1--------------1-----------11-1111111111111111111111111111111111111111111111111---111111111111111111211111111111111111111122111111111111111111111111111111111111111111111111111111111111111111111111111111111111111111----------------------------1--112211111111-------2-11111111111111121111111111111111-1-1111111111111111111111111111111111111111111111111111111111-1111----1-1111111-11-1111111111111111111111111111111111111111111111111111111111111111111111111111111111---1111111111111111111112211-1--------------------------111111111111111111111111111111111-11111------11111121111111111-1111111111111111111111211111222122122121221211111111-111111111111---1-----111111111111111111111111-111111111111111111111111111111111111112111111111111111111111112222111-----------------111111-1111111111111111111-----------1- --------------11-1-1111111-111111111---------1--111111--1-1111-------------------------------1------1--1-----------------------------------------------------------1-------------111111--3221121------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 297 STR:RPRED 99.7 SQ:SECSTR #ccHHHHHHHHHHHHHHHTTcEEEEEEEcEEEcccTTTEEcGGGGTTEEEEEEEEETTEEEEEETTTEEEEEEcTTTcEEEcEHHHHHcHHHHHHEEcTTccccTTEEEEEEEcccEEccEEEEEcTTcccEEEEEETTccTTcTHHHHccccTTcTTccHHHHHHHHHTccccHHHHHHHccccTTccHHHHHHHHHHTTccccccGGGccHHHHHcHHHHHHHHHHHHHHHHHHHHTTcccccccccTTccccccGGGcccTTcTTcccccTTTccccEEEEccccEEEEcTTTTT PSIPRED cccccHHHHHHHHHHHHHcccEEEEEEEEccccccccHHHHHHHHcccEEEEEEEEccEEEEEEccccEEEEEccccEEEEEEccccccccccccccccccccccccEEEEEEcccccEEEEEEEcccccEEEEEEEcccccccHHHHHHccccccccccHHHHHHHHccccccHHHHHHcccEEcccHHHHHHHHHHHccccccccHHcccccccccHHHHHHHHHHHHHHHHHHHHHccccEEccccccccccccccEEEEEccccccccccccccEEEEEEEccccEEEcccccc //