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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : ndh
DDBJ      :ndh          NADH dehydrogenase
Swiss-Prot:             

Homologs  Archaea  15/68 : Bacteria  577/915 : Eukaryota  135/199 : Viruses  0/175   --->[See Alignment]
c.143.1c.3.1
:421 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   65->367 1xhcA PDBj 2e-09 29.4 %
:RPS:PDB   81->223 2cyjA PDBj 5e-08 9.0 %
:RPS:PDB   206->411 2cfyA PDBj 1e-21 13.1 %
:RPS:SCOP  25->75 2hzbA1  c.143.1.1 * 4e-06 13.7 %
:RPS:SCOP  81->333 1mo9A1  c.3.1.5 * 4e-19 12.0 %
:HMM:SCOP  2->212 1fcdA1 c.3.1.5 * 7.4e-33 34.2 %
:HMM:SCOP  143->340 1hyuA1 c.3.1.5 * 3.4e-26 35.6 %
:RPS:PFM   161->242 PF00070 * Pyr_redox 1e-10 49.3 %
:HMM:PFM   6->303 PF07992 * Pyr_redox_2 1.4e-29 32.3 186/202  
:BLT:SWISS 29->364 Y2010_STAHJ 2e-38 33.2 %
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87777.2 GT:GENE ndh GT:PRODUCT NADH dehydrogenase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION complement(1984320..1985585) GB:FROM 1984320 GB:TO 1985585 GB:DIRECTION - GB:GENE ndh GB:PRODUCT NADH dehydrogenase GB:PROTEIN_ID AAK87777.2 GB:DB_XREF GI:159140288 GB:GENE:GENE ndh LENGTH 421 SQ:AASEQ MQEHHVVVVGGGFGGLQLVHGLEGAPVRITLIDRRNHHLFQPLLYQVATTALATSEIAWPIRHLYRDRKEVTTLLAEVTGVDRAARTVQLNSGQVIGFDTLVLATGARHAYFGHDEWERSAPGLKTLEDATTIRRRLLLAFERAELATSEEERQALLTFVIIGAGPTGVEMAGMIAELAHRALPAEFRNVDTRKTRVLLVEAGPRVLPVFTEDLSTYAKEALEKLGVEVLLGTPVTACTDEGVTVGETYYPCRTVVWAAGVQASPAAKWLNAAGDRAGRVIVGPQLHLEDDADIFVIGDTAAVNQENGKPVPGIAPAAKQQGAYVAKVIKARLEGKPIPAPFRYSHQGNLATIGKRAAVIDFGRFKLKGVLAWWIWGLAHIYFLIGTRSRLAVAWSWLWIYLSGQHSARLITQKETLKDEA GT:EXON 1|1-421:0| BL:SWS:NREP 1 BL:SWS:REP 29->364|Y2010_STAHJ|2e-38|33.2|328/402| SEG 4->22|hhvvvvgggfgglqlvhgl| SEG 134->147|rrrlllaferaela| BL:PDB:NREP 1 BL:PDB:REP 65->367|1xhcA|2e-09|29.4|248/346| RP:PDB:NREP 2 RP:PDB:REP 81->223|2cyjA|5e-08|9.0|111/117| RP:PDB:REP 206->411|2cfyA|1e-21|13.1|199/484| RP:PFM:NREP 1 RP:PFM:REP 161->242|PF00070|1e-10|49.3|67/78|Pyr_redox| HM:PFM:NREP 1 HM:PFM:REP 6->303|PF07992|1.4e-29|32.3|186/202|Pyr_redox_2| GO:PFM:NREP 3 GO:PFM GO:0016491|"GO:oxidoreductase activity"|PF00070|IPR001327| GO:PFM GO:0050660|"GO:FAD binding"|PF00070|IPR001327| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00070|IPR001327| RP:SCP:NREP 2 RP:SCP:REP 25->75|2hzbA1|4e-06|13.7|51/311|c.143.1.1| RP:SCP:REP 81->333|1mo9A1|4e-19|12.0|234/261|c.3.1.5| HM:SCP:REP 2->212|1fcdA1|7.4e-33|34.2|184/0|c.3.1.5|1/2|FAD/NAD(P)-binding domain| HM:SCP:REP 143->340|1hyuA1|3.4e-26|35.6|174/0|c.3.1.5|2/2|FAD/NAD(P)-binding domain| OP:NHOMO 1327 OP:NHOMOORG 727 OP:PATTERN ------11------1-1-------31121-11----------------1----1------------11 2121411111111124422-221123222221244433A81323112111112211111122112323642-----------2--1--111--1---1111111231211--------------1111221111-12221----113651333123322222223136653-21-1112--11111-----22333333333333333322332333322223212222223222222212222222212222311-11-1---221122-1-1112221111-------------------------------22---2221---------------1---------1--1--2----1--1-----1----1-11---------14211-11111111111111111-11211112112-1111233111221--1--1-1111---22222222-1111-------------------------------------1121124332332111133531111-14241251-1111-3111111-2-22-11111----------112-1------1---111----211---112122--1---1-----1-1-------1--1-2211111--11111111111311122133222--1----------21111111111111111-1111111111111-111111111111112111111111111111111111111111111111111---------1111111111111-11111-1---22222-1---1122223111213121111-11-11111-222211111211111111111111--------111111----------------------------------------------12- --11431-211-1235422344354533333133323333233122444745472233233221123322232212323332222222-44242332322323454-241-------------------------------------------------111-11--------113341M2113354692633421221 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 389 STR:RPRED 92.4 SQ:SECSTR #######################HHHHTTEEEcccccccccccccTTcTTcccHHHHHHHHHHHHHTTcEEEcEEEEEEETTEEEEEETTccEEEEEccEEEEcccEEEcccccTTHHHHcEEHHHHTTcccccccETTEEcHHHHHHTccccccEEEEEEEcccHHHHHHHHHHHHTTccEEEEEcccccTTccHHHHHHHHHHccTTccHHHHHHHHHHHHHTTcEEEEcEEEEEEEEEEccTTcEEEEEcEEEEcccEEEccccccGGGTTcTTTccccccTTcccccTTEEEccTTcTTcTTccETccccHHHHHHHHHHHHHHHHcccccccccccccEEccccEEEEEccHHHHHHHHcGGGEEEEEEEEccGGGTTTTccTTcEEEEEEEEGGGTTEEEEEEEEc######### DISOP:02AL 1-2,410-422| PSIPRED ccccEEEEEcccHHHHHHHHHHHccccEEEEEccccccccccccHHHHcccccHHHHcccHHHHHHHcccEEEEEEEEEEEEccccEEEEccccEEEccEEEEEccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccHHccccEEEEEcccHHHHHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccccccHHHHHHHHHHHHHcccEEEEccEEEEEEccEEEEccEEEEccEEEEEccccccHHHHHccccccccccEEEcccccccccccEEEEEEEEEEEccccccccccHHHHHHHHHHHHHHHHHHHcccccccccEEcccccEEEEccccEEEEEccEEEccHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccEEEEEEccccccccc //