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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : nouD
DDBJ      :nouD         NADH ubiquinone oxidoreductase chain D
Swiss-Prot:NUOD_AGRT5   RecName: Full=NADH-quinone oxidoreductase subunit D;         EC=1.6.99.5;AltName: Full=NADH dehydrogenase I subunit D;AltName: Full=NDH-1 subunit D;

Homologs  Archaea  67/68 : Bacteria  603/915 : Eukaryota  151/199 : Viruses  0/175   --->[See Alignment]
e.18.1
:396 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   22->396 3iam4 PDBj 6e-92 44.2 %
:RPS:PDB   2->393 3curH PDBj e-102 16.6 %
:RPS:SCOP  18->396 2fug41  e.18.1.2 * e-121 46.2 %
:HMM:SCOP  18->396 2fug41 e.18.1.2 * 1.4e-135 44.5 %
:RPS:PFM   122->396 PF00346 * Complex1_49kDa 3e-92 62.6 %
:HMM:PFM   122->396 PF00346 * Complex1_49kDa 2.4e-125 59.2 272/272  
:HMM:PFM   47->115 PF00374 * NiFeSe_Hases 0.00023 27.5 69/507  
:BLT:SWISS 1->396 NUOD_AGRT5 0.0 100.0 %
:PROS 383->392|PS00503|PECTINESTERASE_2
:PROS 45->56|PS00535|COMPLEX1_49K

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87067.1 GT:GENE nouD GT:PRODUCT NADH ubiquinone oxidoreductase chain D GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1258211..1259401 GB:FROM 1258211 GB:TO 1259401 GB:DIRECTION + GB:GENE nouD GB:PRODUCT NADH ubiquinone oxidoreductase chain D GB:PROTEIN_ID AAK87067.1 GB:DB_XREF GI:15156321 GB:GENE:GENE nouD LENGTH 396 SQ:AASEQ MTEHNVRNFTINFGPEHPSAHGVLRLVLELDGEIVERVDPHIGLLHRGTEKLIETKTYLQAVPYFDRLDYVAPMNQEHAFALAVEKLLGLEIPMRGQLIRVLYSEIGRILSHIMNVTTQAMDVGAMTPPVWGFEEREKLMVFYERACGARMHSAYVRPGGVHQDLPPELVDDIGKWCDPFLTVLDNIEGLLTDNRIYKQRNVDIGVVSLEDAFAWGFTGVMVRGSGAAWDLRRSQPYECYSDLEFDIPVGKNGDCYDRYLIRMQEMRESVKIMKQCVDRLSGKHRIGPVSSLDGKVVPPKRGEMKRSMEALIHHFKLYTEGYHVPAGEVYAAVEAPKGEFGVYVVADGSNKPYRCKIRAPGYAHLQAMDFLCKGHQLADVTAVLGSLDIVFGEVDR GT:EXON 1|1-396:0| SW:ID NUOD_AGRT5 SW:DE RecName: Full=NADH-quinone oxidoreductase subunit D; EC=1.6.99.5;AltName: Full=NADH dehydrogenase I subunit D;AltName: Full=NDH-1 subunit D; SW:GN Name=nuoD; OrderedLocusNames=Atu1272; ORFNames=AGR_C_2346; SW:KW Cell inner membrane; Cell membrane; Complete proteome; Membrane; NAD;Oxidoreductase; Quinone; Transport; Ubiquinone. SW:EXACT T SW:FUNC + BL:SWS:NREP 1 BL:SWS:REP 1->396|NUOD_AGRT5|0.0|100.0|396/396| GO:SWS:NREP 7 GO:SWS GO:0005886|"GO:plasma membrane"|Cell inner membrane| GO:SWS GO:0005886|"GO:plasma membrane"|Cell membrane| GO:SWS GO:0016020|"GO:membrane"|Membrane| GO:SWS GO:0016491|"GO:oxidoreductase activity"|Oxidoreductase| GO:SWS GO:0055114|"GO:oxidation reduction"|Oxidoreductase| GO:SWS GO:0048038|"GO:quinone binding"|Quinone| GO:SWS GO:0006810|"GO:transport"|Transport| PROS 383->392|PS00503|PECTINESTERASE_2|PDOC00413| PROS 45->56|PS00535|COMPLEX1_49K|PDOC00521| BL:PDB:NREP 1 BL:PDB:REP 22->396|3iam4|6e-92|44.2|371/378| RP:PDB:NREP 1 RP:PDB:REP 2->393|3curH|e-102|16.6|379/545| RP:PFM:NREP 1 RP:PFM:REP 122->396|PF00346|3e-92|62.6|254/254|Complex1_49kDa| HM:PFM:NREP 2 HM:PFM:REP 122->396|PF00346|2.4e-125|59.2|272/272|Complex1_49kDa| HM:PFM:REP 47->115|PF00374|0.00023|27.5|69/507|NiFeSe_Hases| GO:PFM:NREP 4 GO:PFM GO:0016651|"GO:oxidoreductase activity, acting on NADH or NADPH"|PF00346|IPR001135| GO:PFM GO:0048038|"GO:quinone binding"|PF00346|IPR001135| GO:PFM GO:0051287|"GO:NAD or NADH binding"|PF00346|IPR001135| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00346|IPR001135| RP:SCP:NREP 1 RP:SCP:REP 18->396|2fug41|e-121|46.2|370/370|e.18.1.2| HM:SCP:REP 18->396|2fug41|1.4e-135|44.5|375/0|e.18.1.2|1/1|HydB/Nqo4-like| OP:NHOMO 1176 OP:NHOMOORG 821 OP:PATTERN 11313121111111113112222121121311212222222222122411223132242531111-11 22213---------12122-21--21212221111111112111-1--1-----------22122112221--------21112322311111---1--1-11--22211--------------1111111111212223333331111111111111111111112111111111111111111111--1-1-111111111111111------111111----------1-------------------------------------------------------------------------------------------1---1----------2-------1-1--2--112221----22--211--23-111111111312112112533311111111111-11111111111111112222212222111111222211111111111322-12231111111111111111111111111111111111-111111111111111111121111111111111111111111111231111111111111111111121111-1-2---342223-433243418333313-2122211111111111111111231222221---------------------1----11--211111111122222213332322233-3333322333323333333222211122222222222222222233332231-21111111111111111111111112--1-----1----------11111111111-1111111111111-1111111111111--------------12111111111111112-111111------------------------------------121111-11-251 ------1-----11111111111111111111111111111111111111111111111111111----1--111------11111---12111251111111112-11-222112-1111111221212B1-1121111111111111-111111-111211116222121232111--------1131-2------- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 391 STR:RPRED 98.7 SQ:SECSTR #cccccccEEEEEcccccHccccEEEEEEEETTEEEEEEEETEcccccHHHHHTTccGGGHHHHHHTTccTTTTHHHHHHHHHHHHHTTccccHHHHHHHHHHHHHHHHHHHHHHHHHTGGGTccTGGGGGcHHHHHHHHHHHHTcccGGGTTcTTTTccTTccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEETTEEccGGGGcHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHTGGGGGccccccEEEccEEEcccccHHHHHHHEEEcc####EEEcTTcTTcccccHccGGGEEEEcTTccccTTcTTccGGcccGGcccccccccTTcTTccccccEEEETTccccccHHHHHHHHHcHHHHHHHHHHHHHTTccGGGcHH DISOP:02AL 1-4| PSIPRED cccccccEEEEEcccccccccccEEEEEEEEccEEEEEEEEEEEEHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHccccHHHHHHcccccEEHEEcccccccccccccccccccccEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEcccccccccHHHHHHHHHHHHHHHccccccccccccccEEEEEEEcccEEEEEEEEcccccEEEEEEEcccHHHHHHHHHHHHcccccHHHHHHHHHccccccccc //