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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : nrdE.1
DDBJ      :nrdE         ribonucleoside-diphosphate reductase 2 alpha chain
Swiss-Prot:             

Homologs  Archaea  42/68 : Bacteria  788/915 : Eukaryota  191/199 : Viruses  19/175   --->[See Alignment]
a.98.1c.7.1
:693 amino acids
:SECSTR
:PSIPRED
:BLT:PDB   1->678 1peuA PDBj 0.0 72.3 %
:RPS:PDB   1->678 2bq1F PDBj 0.0 71.9 %
:RPS:SCOP  1->153 1pemA1  a.98.1.1 * 4e-43 61.4 %
:RPS:SCOP  154->678 1pemA2  c.7.1.2 * e-167 75.0 %
:HMM:SCOP  1->153 1peqA1 a.98.1.1 * 2.1e-56 52.9 %
:HMM:SCOP  154->678 1peqA2 c.7.1.2 * 4.8e-187 42.3 %
:RPS:PFM   2->76 PF08343 * RNR_N 3e-23 63.5 %
:RPS:PFM   81->151 PF00317 * Ribonuc_red_lgN 3e-08 44.3 %
:RPS:PFM   156->672 PF02867 * Ribonuc_red_lgC 3e-97 45.0 %
:HMM:PFM   154->672 PF02867 * Ribonuc_red_lgC 1.3e-160 41.3 487/533  
:HMM:PFM   1->76 PF08343 * RNR_N 2.8e-31 59.2 76/82  
:HMM:PFM   78->150 PF00317 * Ribonuc_red_lgN 7.2e-15 34.7 72/83  
:BLT:SWISS 1->693 RIR1_MYCTU 0.0 81.8 %
:PROS 545->567|PS00089|RIBORED_LARGE

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK85889.2 GT:GENE nrdE.1 GT:PRODUCT ribonucleoside-diphosphate reductase 2 alpha chain GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 71679..73760 GB:FROM 71679 GB:TO 73760 GB:DIRECTION + GB:GENE nrdE GB:PRODUCT ribonucleoside-diphosphate reductase 2 alpha chain GB:PROTEIN_ID AAK85889.2 GB:DB_XREF GI:159139482 GB:GENE:GENE nrdE LENGTH 693 SQ:AASEQ MLNLYDENGKIQLDKDRLAARQYFLQHVNQNTVFFHNLREKLDYLVTEGYYEQEVLDQYSFNFVRDLYDEAYSRKFRFPTFLGAFKYYTSYTLKTFDGKRYLERYEDRVCMVALALARGDEQLARDLMDEIISGRFQPATPTFLNAGKKSRGELVSCFLLRVEDNMESIGRSINSALQLSKRGGGVALSLTNIREFGAPIKQIENQSSGVIPVMKLLEDSFSYANQLGARQGAGAVYLHAHHPDIMRFLDTKRENADEKIRIKTLSLGVVIPDITFELARNNEDMYLFSPYDVERVYGVPLTEISVTEKYHEMVADSRIRKKKIKAREFFQVIAEIQFESGYPYIMFEDTVNRANPVAGRISMSNLCSEILQVSEASEFNADLSYSHMGKDISCNLGSLNIASAMDSADFGKTIETSIRALTAVSDMSHISSVPSVEKGNDASHAIGLGQMNLHGYLARERIFYGSEEGIDFTNIYFYTVTYHAIRASNRLAVERGQSFKGFENSKYASGDYFDKYTDREWLPATEKVRDLFEKAGIAIPTQEDWTALKQDVMASGLYNQNLQAVPPTGSISYINHSTSSIHPIVSKIEIRKEGKIGRVYYPASYLSNDNLEYYQDAYEIGPEKIIDTYAAATQHVDQGLSLTLFFRDTATTRDINRAQIYAWRRGIKTIYYIRLRQMALEGTQVQGCVSCTL GT:EXON 1|1-693:0| BL:SWS:NREP 1 BL:SWS:REP 1->693|RIR1_MYCTU|0.0|81.8|693/725| PROS 545->567|PS00089|RIBORED_LARGE|PDOC00084| BL:PDB:NREP 1 BL:PDB:REP 1->678|1peuA|0.0|72.3|678/692| RP:PDB:NREP 1 RP:PDB:REP 1->678|2bq1F|0.0|71.9|673/684| RP:PFM:NREP 3 RP:PFM:REP 2->76|PF08343|3e-23|63.5|74/81|RNR_N| RP:PFM:REP 81->151|PF00317|3e-08|44.3|70/80|Ribonuc_red_lgN| RP:PFM:REP 156->672|PF02867|3e-97|45.0|478/506|Ribonuc_red_lgC| HM:PFM:NREP 3 HM:PFM:REP 154->672|PF02867|1.3e-160|41.3|487/533|Ribonuc_red_lgC| HM:PFM:REP 1->76|PF08343|2.8e-31|59.2|76/82|RNR_N| HM:PFM:REP 78->150|PF00317|7.2e-15|34.7|72/83|Ribonuc_red_lgN| GO:PFM:NREP 12 GO:PFM GO:0004748|"GO:ribonucleoside-diphosphate reductase activity"|PF08343|IPR013554| GO:PFM GO:0005515|"GO:protein binding"|PF08343|IPR013554| GO:PFM GO:0005971|"GO:ribonucleoside-diphosphate reductase complex"|PF08343|IPR013554| GO:PFM GO:0006260|"GO:DNA replication"|PF08343|IPR013554| GO:PFM GO:0055114|"GO:oxidation reduction"|PF08343|IPR013554| GO:PFM GO:0004748|"GO:ribonucleoside-diphosphate reductase activity"|PF00317|IPR013509| GO:PFM GO:0005524|"GO:ATP binding"|PF00317|IPR013509| GO:PFM GO:0006260|"GO:DNA replication"|PF00317|IPR013509| GO:PFM GO:0055114|"GO:oxidation reduction"|PF00317|IPR013509| GO:PFM GO:0004748|"GO:ribonucleoside-diphosphate reductase activity"|PF02867|IPR000788| GO:PFM GO:0005971|"GO:ribonucleoside-diphosphate reductase complex"|PF02867|IPR000788| GO:PFM GO:0006260|"GO:DNA replication"|PF02867|IPR000788| RP:SCP:NREP 2 RP:SCP:REP 1->153|1pemA1|4e-43|61.4|153/162|a.98.1.1| RP:SCP:REP 154->678|1pemA2|e-167|75.0|520/520|c.7.1.2| HM:SCP:REP 1->153|1peqA1|2.1e-56|52.9|153/162|a.98.1.1|1/1|R1 subunit of ribonucleotide reductase, N-terminal domain| HM:SCP:REP 154->678|1peqA2|4.8e-187|42.3|525/525|c.7.1.2|1/1|PFL-like glycyl radical enzymes| OP:NHOMO 1365 OP:NHOMOORG 1040 OP:PATTERN ------1111111111-1111111-221-111--1--------111--1-111---111111111-11 1-11221111111111122-211112222221222211112211111211111211111122122222222-111111--1-11122112-211111--21212221111111111111111111-----------111--32312211-111----------11-------------------111111-111112221122222112121112212121211111111112111111111111111112111-1-11-2-1-11111111111111122221221111111111111122222222222221111111111---1111-111111112--1111111112---111--1-1111111-11123-211211111--1--111-1---11111111111---------2-21111111-111----121--2111111111111111111112231111111111111111111111111111111111111111111111111111122111111122222211211222222243121111222221111111111111211-111111-1111111121211222212211111111111111111111111111112211211111111111111111111111111--111111-11122121222222222222-222222222222222222222222222222222222213222222222222112223222332221111111111111212211111111111--11111111111111122221111111111111111111111121121111111211221111111111111111---------1--1-11111111---11-11111111111---1-111111111-- 1111111-311-1111111111111111121111111111111111111111111111111122222212122222212222222211-111111111111114231141123222111111111--11291-112111111111111-11112111111643111-111111221111H1111121241112241115 ---1-1-1--------1--1-1-11-----------11-1--------------------------------------------------------------------------1-----------1---------------------------------1---1-----1111- STR:NPRED 679 STR:RPRED 98.0 SQ:SECSTR GGGcccccccccTHHHHHHHHHHHHHTTGGGccccccHHHHHHHHHHTTcccHHHHTTccHHHHHHHHHHHHHTccccccHHHHHHHHHHTccccTTcccccccHHHHHHHHHHHHHTTcHHHHHHHHHHHHTTcEEEcHHHHTTcccccccccccEEEEEccccHHHHHHHHHHHHHHHTTTcEEEEEcTTcccTTcccTTccccccccHHHHHHHHHHHHHcTTTTTccccEEEEEETTcTTHHHHTTccccccccTTcccccEEEEEccTHHHHHHHTccEEEEEcHHHHHHHHcccGGGccccTTHHHHHHcccccEEEEEHHHHHHHHHHHHHHHcccEEEcHHHHHHHcccccccccccTTccccccccccEEcTTccEEEccccEEccEEEEcHHHHHHcccHHHHHHHHHHHHHHHHTTccccccHHHHHHHHHHcccEEccccHHHHHHHTTccTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTcccccGGGcHHHHTTTTTTTcccccccccHHHHHHHHHHTcccccTTHHHHHHHHHHHHcccccccccccccccGGGTTTcccccccccccEEEEccTTTccEEEEcTTcccccGGGcccHHHHcHHHHHHHHHHHHHHccccccccEEEcTTccHHHHHHHHHHHHHHTccEEccEEEcccc############## PSIPRED ccccHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccHHHccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHccccccEEEEcHHHHHHHHHHHHccccHHHHHHHHHHHHcccEEcccccEEcccccccccEEEEEEEcccccHHHHHHHHHHHHHHHHcccEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHHccccccEEEEEEEccHHHHHHHHHHcccccccccccccccHHccccHHHHHHHHccccEEEEcccccccccccccccHHHHHHHHHHHHcccEEEEEEEHHHHHHHHHHHHHHccccEEEEHHHHHccccccccEEEEccccccccccccccccccccccccccccccccccccHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHccccEEEEccHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccHHHHHccccccccccHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHccccccccccccEEEEEccccccEEEccccccHHHHHHHHHHHcccHHHHHHHHHHHHcHHHHHEEEEEEEcccccHHHHHHHHHHHHHccccEEEEEcccccccccccccccccccc //