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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : ntrX
DDBJ      :ntrX         two component response regulator
Swiss-Prot:             

Homologs  Archaea  19/68 : Bacteria  849/915 : Eukaryota  12/199 : Viruses  0/175   --->[See Alignment]
a.102.3a.4.1c.129.1c.23.1c.37.1
:454 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   5->373 3dzdA PDBj 4e-64 38.7 %
:RPS:PDB   7->394 1e32A PDBj 2e-46 11.5 %
:RPS:PDB   408->454 3e7lA PDBj 7e-09 36.2 %
:RPS:SCOP  5->107 2nx2A1  c.129.1.2 * 2e-16 11.1 %
:RPS:SCOP  88->450 1hn0A1  a.102.3.2 * 4e-37 10.8 %
:HMM:SCOP  4->187 1s8nA_ c.23.1.1 * 4.3e-41 41.0 %
:HMM:SCOP  141->388 1ny5A2 c.37.1.20 * 5.3e-60 34.0 %
:HMM:SCOP  352->455 1etoB_ a.4.1.12 * 1.4e-13 29.6 %
:RPS:PFM   5->113 PF00072 * Response_reg 4e-15 38.3 %
:RPS:PFM   142->306 PF00158 * Sigma54_activat 1e-34 47.3 %
:RPS:PFM   411->450 PF02954 * HTH_8 2e-04 47.5 %
:HMM:PFM   142->305 PF00158 * Sigma54_activat 5e-51 48.2 164/168  
:HMM:PFM   5->113 PF00072 * Response_reg 9.5e-29 43.9 107/112  
:HMM:PFM   412->450 PF02954 * HTH_8 9e-13 43.6 39/42  
:BLT:SWISS 1->454 NTRX_AZOC5 e-154 62.0 %
:PROS 352->361|PS00688|SIGMA54_INTERACT_3
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87239.1 GT:GENE ntrX GT:PRODUCT two component response regulator GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1443150..1444514 GB:FROM 1443150 GB:TO 1444514 GB:DIRECTION + GB:GENE ntrX GB:PRODUCT two component response regulator GB:PROTEIN_ID AAK87239.1 GB:DB_XREF GI:15156525 GB:GENE:GENE ntrX LENGTH 454 SQ:AASEQ MASDILVVDDEADIREIVAGILSDEGHETRMAFDSDSALAAISERVPRLIFLDIWMQGSKLDGLALLDEIKSRHPEIPVVMISGHGNIETAVNAIKRGAFDFIEKPFKADRLILIAERALENSKLKREVQELKKRTGDAVELVGASLAVSQLRQTIDRVAPTNSRIMILGPSGSGKELVARMVHKKSSRATGPFVALNAATITPDRMEIALFGTEGLPGQPRKVGALEEAHRGVLYLDEVGEMPRETQNKILRVLVDQQFERVGGGKRVKVDVRIISSTAHHLESLIAEGQFREDLYHRLAVVPVKVPALSERREDIPFLVDMFMRQISEQAGIRPRKIGDDAMAVLQTHDWPGNIRQLRNNIERLMILARPEGGEAPISADMLPSDIGDMLPKISAQGDQHIMTLPLREAREMFERDYLMAQINRFGGNISRTAEFVGMERSALHRKLKSLGV GT:EXON 1|1-454:0| BL:SWS:NREP 1 BL:SWS:REP 1->454|NTRX_AZOC5|e-154|62.0|450/454| PROS 352->361|PS00688|SIGMA54_INTERACT_3|PDOC00579| SEG 262->274|rvgggkrvkvdvr| BL:PDB:NREP 1 BL:PDB:REP 5->373|3dzdA|4e-64|38.7|357/366| RP:PDB:NREP 2 RP:PDB:REP 7->394|1e32A|2e-46|11.5|374/438| RP:PDB:REP 408->454|3e7lA|7e-09|36.2|47/60| RP:PFM:NREP 3 RP:PFM:REP 5->113|PF00072|4e-15|38.3|107/111|Response_reg| RP:PFM:REP 142->306|PF00158|1e-34|47.3|165/168|Sigma54_activat| RP:PFM:REP 411->450|PF02954|2e-04|47.5|40/42|HTH_8| HM:PFM:NREP 3 HM:PFM:REP 142->305|PF00158|5e-51|48.2|164/168|Sigma54_activat| HM:PFM:REP 5->113|PF00072|9.5e-29|43.9|107/112|Response_reg| HM:PFM:REP 412->450|PF02954|9e-13|43.6|39/42|HTH_8| GO:PFM:NREP 9 GO:PFM GO:0000156|"GO:two-component response regulator activity"|PF00072|IPR001789| GO:PFM GO:0000160|"GO:two-component signal transduction system (phosphorelay)"|PF00072|IPR001789| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00072|IPR001789| GO:PFM GO:0005524|"GO:ATP binding"|PF00158|IPR002078| GO:PFM GO:0005622|"GO:intracellular"|PF00158|IPR002078| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00158|IPR002078| GO:PFM GO:0008134|"GO:transcription factor binding"|PF00158|IPR002078| GO:PFM GO:0003700|"GO:transcription factor activity"|PF02954|IPR002197| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF02954|IPR002197| RP:SCP:NREP 2 RP:SCP:REP 5->107|2nx2A1|2e-16|11.1|99/177|c.129.1.2| RP:SCP:REP 88->450|1hn0A1|4e-37|10.8|342/384|a.102.3.2| HM:SCP:REP 4->187|1s8nA_|4.3e-41|41.0|173/190|c.23.1.1|1/1|CheY-like| HM:SCP:REP 141->388|1ny5A2|5.3e-60|34.0|244/247|c.37.1.20|1/1|P-loop containing nucleoside triphosphate hydrolases| HM:SCP:REP 352->455|1etoB_|1.4e-13|29.6|98/98|a.4.1.12|1/1|Homeodomain-like| OP:NHOMO 8764 OP:NHOMOORG 880 OP:PATTERN ------------------------3---13-1------1111131--4--1-2-1-1111-------- ARQ21-1333432221111-15111311111254442673311122-11221332122--33216-285321111111--31364A88AAAB29331--537359R5I8B11111111111111133396367785EEDB9644F1DACEAA333564243548646AAK522233223232323111--198AJJJJJIIJDLIIKJHEH99DAILO7CBCB45534545ZF533333323333333222233211111111211111111113----4541222311434444444441111111111111-1111111137OMCMHHGJIHJ9I99LAAA5466D711F5696rlFQJC7HF8A7D722-IMJA77B22223FBSIL879HGBCE55455554556-DEFBDCJI6C81977ACDBFECCCII77586CDADE59877777777B3322G9G11111122--111111111111111--1-25BCA57B87DURSRTRKHHHHOOTUKLJJDHPTRNUQJ44GIGNODBCKKHOKCBBJEGBDFA2211111677QTSE**gPT*jIrfppr6upukgdrOYlmoq**On1211111111111111111125212FEJECEGDMCEC8LHHIIGKKNNMLNKKLKPO--3EMEK------E8ACA97ECCFEDFGDE-CFDDGEEDDDCDFEEDEEDHIHBB989DBCCCDEDDEDDEDCEBA97BABA4-8889A9988ABA---6222223333D4XBO1112111222211136676658343VCTTTUQVWURTWWPIWSQ11-1-21-17BGHNJJJJJKPHLK9CC9A9999A344411J37766661111111142--------------------------25233242327J4 -1------------2---------------------------------------------------------------------------------1-1-----------------------------------------------------------5-----------3--3---1-------1--5---1-1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 454 STR:RPRED 100.0 SQ:SECSTR EEccEEEEEcHHHHHHTTccTTcEEEEEEcTTccccccEEEEEcGGGTTTccccHHHHHHTHHHHHTTccEEEETTcEEEEEETTEEEEEEEEEEccccEEEEcTTcccccccccccccTTcccTTcccGGGcccccHHHHHHHHHHHHHcHHHHHHcccccccEEEEEccTTccHHHHHHHHHHHGGHHTTcEEEEEcHHHHTTccTTHHHHHHHTTcccHHHHHHHHTccEEEEEccGGGTccHHHHcccTTHHHHHHHHHHHHHTccccccEEEEEEEccGGGccGGGTcTTcccEEEEcccccHHHHHHHHHHTTTccccTTccHHHHHHHcTTccHHHHHHHHHHHHHHHHHHHHHHHccccccHTcccHHHHHHccccHHHHHHHHTcHHHHTTccccccccccEEEEccHHHHHHHHHHHHTTcccccHHTcccccHHHHHHHHHcc DISOP:02AL 121-142, 391-404| PSIPRED cccEEEEEEccHHHHHHHHHHHHHcccEEEEEccHHHHHHHHHcccccEEEEEcccccccccHHHHHHHHHHHccccEEEEEEccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHcccccEEEEccccccHHHHHHHHHHHcccccccEEEEEcccccHHHHHHHHccccccccccccccHHHHHcccEEEEccHHHccHHHHHHHHHHHHccEEEEccccEEEEEEEEEEEEccccHHHHHHcccccHHHHHHHccEEEEccccccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHcccccccHHHHHHHHHHHHHHcccccccccccHHHccHHHHHHccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHcccHHHHHHHHHHHcc //