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Agrobacterium tumefaciens str. C58 (atum0)
Chromosome : circular
Gene : ntrY
DDBJ      :ntrY         two component sensor kinase
Swiss-Prot:             

Homologs  Archaea  17/68 : Bacteria  714/915 : Eukaryota  6/199 : Viruses  0/175   --->[See Alignment]
a.274.1a.30.2d.110.3d.122.1f.55.1
:753 amino acids
:SECSTR
:PSIPRED
:DISOPRED
:BLT:PDB   516->736 3dgeA PDBj 1e-14 30.4 %
:RPS:PDB   326->378 2aswA PDBj 9e-08 30.2 %
:RPS:PDB   386->443 3c2wE PDBj 2e-05 6.9 %
:RPS:PDB   417->736 3d2rB PDBj 2e-25 16.6 %
:RPS:SCOP  326->378 2aswA1  a.274.1.1 * 2e-08 30.2 %
:RPS:SCOP  349->527 2axtC1  f.55.1.1 * 1e-08 7.9 %
:RPS:SCOP  502->577 2c2aA1  a.30.2.1 * 9e-07 22.2 %
:RPS:SCOP  612->740 1gjvA2  d.122.1.4 * 2e-15 23.0 %
:HMM:SCOP  370->498 1ew0A_ d.110.3.2 * 7.7e-10 23.1 %
:HMM:SCOP  490->582 2c2aA1 a.30.2.1 * 7.3e-09 13.5 %
:HMM:SCOP  576->743 1gkzA2 d.122.1.4 * 3.9e-30 30.1 %
:RPS:PFM   306->375 PF00672 * HAMP 3e-09 40.6 %
:RPS:PFM   394->451 PF00989 * PAS 7e-06 36.2 %
:RPS:PFM   625->736 PF02518 * HATPase_c 2e-09 39.4 %
:HMM:PFM   621->736 PF02518 * HATPase_c 1.8e-18 40.8 103/111  
:HMM:PFM   307->374 PF00672 * HAMP 6.7e-15 40.3 67/70  
:HMM:PFM   510->577 PF00512 * HisKA 1.9e-10 18.3 60/68  
:HMM:PFM   402->500 PF08448 * PAS_4 2.5e-09 20.2 99/110  
:HMM:PFM   354->396 PF05739 * SNARE 0.00091 18.6 43/63  
:BLT:SWISS 44->735 NTRY_AZOC5 e-161 49.2 %
:TM
:COIL
:SEG

SeqInfo AminoSeq See neighboring genes
Links GIB DAD Abbreviations Back to title page
GT:ID AAK87238.1 GT:GENE ntrY GT:PRODUCT two component sensor kinase GT:DATABASE GIB00072CH01 GT:ORG atum0 GB:ACCESSION GIB00072CH01 GB:CHROMOSOME circular GB:LOCATION 1440899..1443160 GB:FROM 1440899 GB:TO 1443160 GB:DIRECTION + GB:GENE ntrY GB:PRODUCT two component sensor kinase GB:PROTEIN_ID AAK87238.1 GB:DB_XREF GI:15156524 GB:GENE:GENE ntrY LENGTH 753 SQ:AASEQ MRKPAAEHDVADEAAGMVVADRRMSFALPGLVLAGVALVCAIITLFVLMGVTPIAPTTNVVIASVVINSILVIGLIFLIGREINRLLKARKKGRAAARLHVRIVVLFSIVAITPAVLVAIFASLTLNVGLDRWFSIRTQSIVESSGNIAQAYMMENAGYLQGQTLSMATDLDRNRALFYLDRTGFVDLMTRQAKGRGLLGAFLVQEDGDAVAQADIKTEKPLPAIPHDALEKAAAGQPTLIPPGITNLVGAIIKLEGISGTFLYTVRAVDPKVMTAMRLMEENRAEYKNMEAGRAPLQIAFAILYLGFALIVLLVAIWTAIAVADRIVRPIRLLISAADSVATGNMHVLVPVRAVDGDVGRLSRTFNKMVSELRSQQEQIIEAKDDIDDRRRFIEAVLSGVTAAVIGIDENRRITIVNPSGEEFLALNFDQLLGAQLSEIAPEIDQVVTEANTWARGNFRKQINIMRRGKERTLNVQVTREDARDGRDSYVITLDDITDLVIAQRSTAWSDVARRIAHEIKNPLTPIQLSAERIKRRFGKQIDENDRAIFDQCTDTIVRQVGDIGRMVDEFSAFARMPKPTKEKSDLRSILKDAAFLREISAADTKFSTEFGDIPLEGMFDARMLGQAFGNLIKNATEAIEAVEGEKRPGKILVRASFDEANSRFVADIIDNGRGLPVENRHRILEPYMTMRDKGTGLGLAIVKKIIEEHGGYLELHDAPAEFDHGHGAMIRVLLPYIEAVGGENNKEAAYGV GT:EXON 1|1-753:0| BL:SWS:NREP 1 BL:SWS:REP 44->735|NTRY_AZOC5|e-161|49.2|685/771| COIL:NAA 22 COIL:NSEG 1 COIL:REGION 368->389| TM:NTM 4 TM:REGION 28->50| TM:REGION 60->82| TM:REGION 101->123| TM:REGION 298->320| SEG 27->41|alpglvlagvalvca| SEG 59->73|nvviasvvinsilvi| SEG 85->99|rllkarkkgraaarl| BL:PDB:NREP 1 BL:PDB:REP 516->736|3dgeA|1e-14|30.4|207/237| RP:PDB:NREP 3 RP:PDB:REP 326->378|2aswA|9e-08|30.2|53/56| RP:PDB:REP 386->443|3c2wE|2e-05|6.9|58/471| RP:PDB:REP 417->736|3d2rB|2e-25|16.6|313/362| RP:PFM:NREP 3 RP:PFM:REP 306->375|PF00672|3e-09|40.6|69/69|HAMP| RP:PFM:REP 394->451|PF00989|7e-06|36.2|58/112|PAS| RP:PFM:REP 625->736|PF02518|2e-09|39.4|99/112|HATPase_c| HM:PFM:NREP 5 HM:PFM:REP 621->736|PF02518|1.8e-18|40.8|103/111|HATPase_c| HM:PFM:REP 307->374|PF00672|6.7e-15|40.3|67/70|HAMP| HM:PFM:REP 510->577|PF00512|1.9e-10|18.3|60/68|HisKA| HM:PFM:REP 402->500|PF08448|2.5e-09|20.2|99/110|PAS_4| HM:PFM:REP 354->396|PF05739|0.00091|18.6|43/63|SNARE| GO:PFM:NREP 5 GO:PFM GO:0004871|"GO:signal transducer activity"|PF00672|IPR003660| GO:PFM GO:0007165|"GO:signal transduction"|PF00672|IPR003660| GO:PFM GO:0016021|"GO:integral to membrane"|PF00672|IPR003660| GO:PFM GO:0006355|"GO:regulation of transcription, DNA-dependent"|PF00989|IPR013767| GO:PFM GO:0005524|"GO:ATP binding"|PF02518|IPR003594| RP:SCP:NREP 4 RP:SCP:REP 326->378|2aswA1|2e-08|30.2|53/54|a.274.1.1| RP:SCP:REP 349->527|2axtC1|1e-08|7.9|178/447|f.55.1.1| RP:SCP:REP 502->577|2c2aA1|9e-07|22.2|72/89|a.30.2.1| RP:SCP:REP 612->740|1gjvA2|2e-15|23.0|122/165|d.122.1.4| HM:SCP:REP 370->498|1ew0A_|7.7e-10|23.1|121/130|d.110.3.2|1/1|PYP-like sensor domain (PAS domain)| HM:SCP:REP 490->582|2c2aA1|7.3e-09|13.5|89/0|a.30.2.1|1/1|Homodimeric domain of signal transducing histidine kinase| HM:SCP:REP 576->743|1gkzA2|3.9e-30|30.1|163/193|d.122.1.4|1/1|ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase| OP:NHOMO 3885 OP:NHOMOORG 737 OP:PATTERN -----------------------33--11335------22212-6--11-3----------------6 7RQ1-121-------11--------1------1111--11-12321-1---1-3111-----2-1---22----------2-1214446684-833---317535C8733----------1111241-331234B24779C6345-925A2112222111111-212HLQ211111111111143111112797AAA9BBBB9BACEEA577766CCD6773237333233EI222222222222222322221--2--21---22--111---1-111111-----11-------------------------1111111111732411111111113422-111213--44265AAEB83245212212--BECC77A2322376E9A644A79A966665665658-788798DG697-7CC7BB8BGEBB8B45895946446543323322334422I3811111111--111111111111111----14475135346A898A73666498A65544278B7B995126555975647AA3555632546411112132248GG5qVHBCLH3LWKJJ3malUQWcAQSQTReXBU41321------1111111117411133112588A56424577634878858767676--16535------61533224335455534-3443455343354344445555111113333333433253534133333341-233244423444---1-----232352D24---------------444343523154BBCA7BDA796C67AAA1--------3-2242222235235444545633312121192775544---1-1111-1-------------------------12223333323K1 -----------------------------------------------------------------------------------------------------1-----------------------------------------------------------------------1----------11--1-----1---- ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- STR:NPRED 425 STR:RPRED 56.4 SQ:SECSTR #####################################################################################################################################################################################################################################################################################################################################HHHHHHHHHHHHHHHHHTccccHHHHHHccHcHHHHHTTTccccccccccccTTcEEccccEEcHHHHHHHHHHHcccEEEEEcTTccEEEccHHHHHHHTcccccccHHHHHHHTTcGGGHHHHHHHHHHHHHHHHHHHHHHHHTccHHHHTcHHHHHHHHHHHHHHHHHHHGGGcTTcHHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHccccccTTTcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccEEHHHHHHHHHHHHHHHHHHHHcccccEEEEcccTTcccEEEEcHHHHHHHHHHHHHHHHHHHHHHHTTTccccccEEEEEEEcccEEEEEEEEccccccGGGTTGGGcTTccccccccccHHHHHHHHHHHTTcEEEEEEETTEEETTTEEEEEEEEEcccETcccTHHHHH### DISOP:02AL 1-9, 212-226, 737-753| PSIPRED cccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccHHHHHHHHHHHHHccccEEEEEcccccEEEEEccccccccccccHHHHHHHHccccEEEEcccccEEEEEEEccccccEEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccEEEHHHHHHHHHcccHHHHccccHHHHccHHHHHHHHHHHHcccccEEEEEEEEcccEEEEEEEEEEEEcccccEEEEEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEcHHHHHHHHHHHHHHHccccEEEEEEcccccEEEEcHHHHHHHHHHHHHHHHHHHHcccccccccEEEEEEEEEccccEEEEEEEEccccccHHHHHHHccccEEEcccccccHHHHHHHHHHHcccEEEEEEccccccccccEEEEEEEEccccccccccccccccc //